BAC Information

Click to search

BAC

Clone NameMSMg01-095H09
Chromosome10 (Build37)
Map Location 59,581,462 - 59,581,787
singlet/doubletsinglet
Overlap geneSpock2
Upstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1
Downstream geneChst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b, Pcbd1, Sgpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H09.T7 (MSMg01no095_h09.b1)MSMg01-095H09.TJ (MSMg01no095_h09.g1)
ACCAG312368AG312369
length767824
length of high quality
(start - end)
326 (126 - 451)286 (159 - 444)
definitionCHROMAT_FILE: MSMg01no095_h09.b1 PHD_FILE: MSMg01no095_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:29 2005CHROMAT_FILE: MSMg01no095_h09.g1 PHD_FILE: MSMg01no095_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNTTTTTTTNNNNTTTTTTTTTTTNNNTTTNCTNNCNCCCGCCC
NNNCGTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT
CCGCGGAATTCCAGGATTCTACAGAGGGTTGTGACTGAAGTCTGTGAGTG
GACTCCAAAGCCCTCAGCAGGTGCTTCCGAGTGGCAGGATCATAGAGGAT
TCTAGATCACCTCGGGTCCGGCCCACTCCACTGTTTTAGTAGGTGGCTGT
TGAGGGCACAGATCTTGATGGTCAAAGACGGCTGCTCCCCAAACACCAGA
CAATTACAAGATCCTCTGTCCTTGAAATGGGGTCAATATGGAGCCTGGAA
TTGGATAGCCTCCTGCCTCAGTTTCTTACTGCTGGAATTGTAGGCGTGCA
ACCTCATGCTTTTTCTCTTCCACTTTACAACCATACCACCCCCTCTTCCC
AAGGGGAAAATAATAGGACCAGCAGGAGACAGTCCCTGAATAAGGCTGGT
ACCTACTTCCACACCAGTCTGGTCATCTTGGCTGTTCTCAGCTATTTGGC
CATTCTCAGCCTATTTCCCATCTTCGTGAAAGGAGGCTCTGGGTGTAAGA
GCCCTGCTTCGAGATGCTGTTGAAGAACGCGTCTAGGACTGAAGCTGCCA
TCCTTTGCCTGCTCCCACAAAAGGCATAGTGTGCTTTGTTGATGCTACCT
CTTATTTTTTCTCACAATACCACATAACTCTACATACTTCCTGGTTTTTT
ATGTGTCGCGTCCGGTA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAACCCCCNNNCCCACTATGAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG
GCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAACAAAAACAAAAACA
AAAACAAAAAAAGACAAAAAAAAAAAAAGAGTATGGGGCACGGGCTGGGC
AAGTACCTCACTGCTAAGTACGTGGTCCCAGCCCTCAGGAGGCAGAGGCA
GGCAGGCATTCCTCTGTGAGTTCAAAGCCAGCCTGGCCTACAAATCAAGT
TCCAGGCCAGCCAGGGCTACACAGAGAACCCCTGTTTCAAGAATATCTTT
TACAAAGCACGACCCAGAGATAAACAGATGTGTCTGGGCCCTTGCTCTGC
TTTAACCTATATTTGAATGTGTTTGTATGTATATGTGTTTGCATGTATAT
GTGCACACACACATATTATATTCTAATTTTCTCATTTAAATTCTTTCTTC
TCTGATTGGATCATGATGTCTTTTGATTAATCTCCACAATATTATAATTA
TTTTCTAGTATTTTCATATTATAACACATTAATATTTTTTGTAATATCAC
AAGTACAAATACAGGTTATTATAATTTTTCTTTATATTATAATAATTATA
CATAATTAACATTTCTTTTTATATAATTCTTATATTATAATTGTTATTAT
ATCTTTATATCCTTTAATACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h09.b1 MSMg01no095_h09.b1 CHROMAT_FILE:
MSMg01no095_h09.b1 PHD_FILE: MSMg01no095_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:29 2005
         (326 letters)



>mm_chr10_59581262_59581987
          Length = 726

 Score =  592 bits (306), Expect = e-173
 Identities = 321/326 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggttgtgactgaagtctgtgagtggactccaaagccctcagcaggtgcttccgagtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggttgtgactgaagtctgtgagtggactccaaagccctcagcaggtgcttccgagtggc 260

                                                                       
Query: 61  aggatcatagaggattctagatcacctcgggtccggcccactccactgttttagtaggtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aggatcatagaggattctagatcacctcgggtccggcccactccactgttttagcaggtg 320

                                                                       
Query: 121 gctgttgagggcacagatcttgatggtcaaagacggctgctccccaaacaccagacaatt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gctgttgaggacacagatcttgatggtcaaagacggctgctccccaaacaccagacaatc 380

                                                                       
Query: 181 acaagatcctctgtccttgaaatggggtcaatatggagcctggaattggatagcctcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagatcctctgtccttgaaatggggtcaatatggagcctggaattggatagcctcctg 440

                                                                       
Query: 241 cctcagtttcttactgctggaattgtaggcgtgcaacctcatgctttttctcttccactt 300
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cctcagttccttactgctggaattgtaggcgtgcaaccccatgctttttctcttccactt 500

                                     
Query: 301 tacaaccataccaccccctcttccca 326
           ||||||||||||||||||||||||||
Sbjct: 501 tacaaccataccaccccctcttccca 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)