BAC Information

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BAC

Clone NameMSMg01-095O09
Chromosome10 (Build37)
Map Location 97,758,762 - 97,759,051
singlet/doubletsinglet
Overlap genenone
Upstream geneDcn, Lum, Kera, Epyc, 4921510H08Rik
Downstream geneEG667438, EG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O09.T7 (MSMg01no095_o09.b1)MSMg01-095O09.TJ (MSMg01no095_o09.g1)
ACCAG312704AG312705
length712709
length of high quality
(start - end)
334 (379 - 712)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no095_o09.b1 PHD_FILE: MSMg01no095_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:03 2005CHROMAT_FILE: MSMg01no095_o09.g1 PHD_FILE: MSMg01no095_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCAAGTGCCTGTTATCAAAGTGTATTATAAGATTAGCTTAGGAAA
GAATGCATTAGTCTATGAGCTCGGACAATAAAATATAAGCATTAGTATGA
TGGAAAGTTAATTCATGTGAAGGAAGATATACAATGTAAAGGGGTCAGAG
ACCTCCAGATGTAATCAGAGGCAAAGCATCTAGTGCAAGGATGTTGTGTA
CAGAGCGGGAGGCTTGCAGGACCTTGGCAAAGCCAGCATTGGGAGATAGG
AGAGATAAGATCAAGTATCAGAGCTTTGTCTCATTACTGTGGTCTCGTGG
TGTTGCCTGTGTTGGGAAAACCGCGGAAATGGCAAGTGTCCTACCTACTT
CATTTATATTTACAACTTTTCCCAACCGATAATCCCCAGGAAAGAGGCAA
CCAAAATTGAAAAACTGTCTAGGTCAAATTTTCCTATGAGACTGTTTGTG
GGTCATTATGTTGATTGTTCATTCATGTGAGAGGTCCAAGCCCATTCTGT
TTAGTATCGCCCCAGGTAGGTGGGCCTGGACTGCATCAGGAAGCCAGAGA
GAGCCAGGGAGAGCAAGACAACAAGCACCATTTTCCTGCCAAGCTCTTCG
GTCCAGTATCTGCCTTGACTTATCCCAATTGTACCCTAGAACTGTTACTG
AAATGATTTCCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTACCTCTGAGCACCATCTATTC
TTAATGTTCTTTCCTATAGAGTTGGTTTGCTTACAGCCTGACACTTCCAT
GAAAAAGGGGTTCCAGATTCCAGAGTAGAAGCTGTGCTTTTGAAACTGAG
GCCCTCTATTCCCACGCCTATGATTTAGCTAGACAAGAGAGCACCAGTTG
TCTTAGTCAGGGTTTCCATTCCTGCACAAACATCATGACCAAGAAGCAAT
TTGGGGAGGAAAAGATTTATTCAGCTTACACGTCCACATTGCTGTTCATC
ACCAAAGGAAGTCAGGACAGGACCTCACACAGGAACTTGAAGGCAGAAGT
GTATACAGAAGCCATGGAGGAATGCTGCTTACTGGTTTGCTTTCCCTTGG
CTTGCTCACTTGTTTTCTTATAGAACCCAAGACTACCAGCCCAGGGACGG
CACCAACTGCCATAGACTAGGACATACCCCCTGATCACTAATGGAGAAAA
TGCTTTATTGCTGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTTT
TTCTATGATAACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGT
ACACCAGGTAATAGAAACCTCATTTTTTTTGAGGCTTTCACATAAGGATG
AACTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o09.g1 MSMg01no095_o09.g1 CHROMAT_FILE:
MSMg01no095_o09.g1 PHD_FILE: MSMg01no095_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:04 2005
         (290 letters)



>mm_chr10_97758676_97759365
          Length = 690

 Score =  499 bits (258), Expect = e-146
 Identities = 282/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttacctctgagcaccatctattcttaatgttctttcctatagagttggtttgctt 60
           |||||||| |||||||||||||||||||| |||| |||||| ||||||| ||||||||||
Sbjct: 376 tttgtttagctctgagcaccatctattctcaatgctctttcttatagaggtggtttgctt 317

                                                                       
Query: 61  acagcctgacacttccatgaaaaaggggttccagattccagagtagaagctgtgcttttg 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 316 acagcctgacacttccatgaaaaaggcgttccagattccagagtagaagctgtgcttttg 257

                                                                       
Query: 121 aaactgaggccctctattcccacgcctatgatttagctagacaagagagcaccagttgtc 180
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 256 aaactgaggccctctattcccaagcctatgatttagctagacaagagagcgccagttgtc 197

                                                                       
Query: 181 ttagtcagggtttccattcctgcacaaacatcatgaccaagaagcaatttggggaggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttagtcagggtttccattcctgcacaaacatcatgaccaagaagcaatttggggaggaaa 137

                                                             
Query: 241 agatttattcagcttacacgtccacattgctgttcatcaccaaaggaagt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 agatttattcagcttacacgtccacattgctgttcatcaccaaaggaagt 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)