Query= MSMg01no096_c11.b1 MSMg01no096_c11.b1 CHROMAT_FILE:
MSMg01no096_c11.b1 PHD_FILE: MSMg01no096_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:24 2005
(288 letters)
>mm_chr10_41552945_41553632
Length = 688
Score = 495 bits (256), Expect = e-144
Identities = 280/288 (97%)
Strand = Plus / Minus
Query: 1 tggtactcctcaaactgtaaacatgaattaaagttaaaaattggtttacaaattttaaga 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 488 tggtactcctcaaactgtaaacatgaattaaagttaaaaattggtttagaaattttaaga 429
Query: 61 aatgttagtagaagtgctgagagtcagcatttccagtgccctcctagtcaatacaaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aatgttagtagaagtgctgagagtcagcatttccagtgccctcctagtcaatacaaagac 369
Query: 121 tgcttgtatctggagaaaagaggcttataaaagaaccttccttaatagatgaggtcagcc 180
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 368 tgcttgtatctgaagaaaagaggcttataaaagaaccttccttaaaagatgaggtcagcc 309
Query: 181 acctgcttaagaaggggccttctctcctggcttgcttaccccatttaaagacaggcagct 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 308 acctgcttaagaaggggccttctctcctggcttgctcaccccatttaaagacaggcagct 249
Query: 241 ccagctgtttttggcagataggtgggaagctaggtacaaactgtcaag 288
||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct: 248 ccagctggtcctggcagataggtaggaagctaggtacaaactgtcaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no096_c11.g1 MSMg01no096_c11.g1 CHROMAT_FILE:
MSMg01no096_c11.g1 PHD_FILE: MSMg01no096_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:24 2005
(306 letters)
>mm_chr10_41431298_41432003
Length = 706
Score = 468 bits (242), Expect = e-136
Identities = 279/306 (91%), Gaps = 24/306 (7%)
Strand = Plus / Plus
Query: 1 taatgagcgccattctttcgatcacttctctacagcggttcttcctgcctgaccacagct 60
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 taatgagtgccattctttcgatcacttctctacagcggttcttcctgtctgaccacagct 260
Query: 61 cagaacaaagttgttgtgaccacaaagaaacagaaatctgtagcatggaaccacaggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaacaaagttgttgtgaccacaaagaaacagaaatctgtagcatggaaccacaggcac 320
Query: 121 agcatgaaaatgtagaattaaaagccacagaaacacaagctccccctcaggagatactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatgaaaatgtagaattaaaagccacagaaacacaagctccccctcaggagatactta 380
Query: 181 gcaaagggtttttttttttgtttgtttgtttgttttttgtttttgttcttttttttcttt 240
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaaggggttttttttt-----gtttgtttgttttttgtttttgttcttttttttcttt 435
Query: 241 tttcttttctttttttttttaggaaaaccatgtctctactcttactacctattataaaat 300
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 t-------------------aggaaaaccatgtctctactcttactacctattataaaat 476
Query: 301 tgcaag 306
||||||
Sbjct: 477 tgcaag 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
