BAC Information

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BAC

Clone NameMSMg01-096G10
Chromosome10 (Build37)
Map Location 49,166,450 - 49,166,738
singlet/doubletsinglet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096G10.T7 (MSMg01no096_g10.b1)MSMg01-096G10.TJ (MSMg01no096_g10.g1)
ACCAG313086AG313087
length718721
length of high quality
(start - end)
409 (48 - 456)339 (69 - 407)
definitionCHROMAT_FILE: MSMg01no096_g10.b1 PHD_FILE: MSMg01no096_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:44 2005CHROMAT_FILE: MSMg01no096_g10.g1 PHD_FILE: MSMg01no096_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGATTCTC
AACTGATTACATCGAATGGCTGAAAAATACCTAAAGAAATATTCAAAATT
CTTAGTCATCAGGGAAATTCAAATCAAAACAACCCTTAGATTCTACTTCA
TACCAGTCAGAATGGTGAATATGGAAGGTGACAGCAGATGCTAGTAGGGA
TGTGGAGAAAGAGGAACATTCCTTGTTTGTTGTTGGGAATGCAAGCTTGT
ACAACCATTCTAGAAAGCAGTCTGGGGGTTCCTTAGAAAATTGGACATAG
TATTACCTGAGGACCTATACTACTCCTGAGCATATACCCAAAAGATGCTC
CAACATATAAGAACGCATGCTCCACTATAGTGATAGCAGCCATATTTATA
ATAGACAGAAGCTGAAAAGAACTCAGATGTCCTGCAACAGAGGAGTGGAT
AGAGAAAATGTGGTATACTTACACAGTGTAGTACTACTCAGCTAATACAA
ACAATGACTTCATGAAATTCTTATGCAAATGGATGGAACACGAAAATATC
ATCCATATTGAGGCAACCTAGTCACAAAAAAACCACAGATAATATGAATT
CCCTGATAAGTGGATATTGTCGTCAACGCTTGTAATACCCAAAATATCAT
TCTCAGACCTCTTGATGCTCTTGAAGAAGAGAGTTCATAGTGTGGATGCT
TTGGTCCTTCTTAAAAGG
AATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGGAATTTGTCTTATTTTTGTTGTTTGTTTT
TAATCACATAAGATTTTTGAAATATAAATGAATATAAATATAGGTAAATC
TGTGCAAAATAGAACATTTTTATCTAATTCTTATAAACCTGATGAAAACT
TAATTTTTTCCCTAAGGGATAATTCATGTATCTGTCACTTAAACAGTTAT
TCAGGACTTTTTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTT
TTTTTTGCTAGTAATGTTTGACTATAAAGCAAAGAGTTTGTGTTTTTTTC
ACCAGACTTTGTAAATTAAAAAGCCACAACTTTGTTGTCAGAATTTAAAT
AGAGCCAGAGTTTACATACTTGACCAGTTTAATACTAAAAGCAACTTACA
ATTATTTGTCTGGCTTGACAGAGAGAAAATCATTCGCCTTGAATCAACAC
TCAGAAAAGCTGACAAATCTACAGTTCCTATACCTGGAATTGCCAAGACC
ATTGTCACCTGCTGTCCTGTATTCCCCACCTCACCTCATGCCCTTTTATC
CGTTACCACCTTGTTTTACCATGACTAATCCTATTTCCTTTCTCCTGAGC
ATATTTGTCTCAATGCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_g10.g1 MSMg01no096_g10.g1 CHROMAT_FILE:
MSMg01no096_g10.g1 PHD_FILE: MSMg01no096_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:44 2005
         (339 letters)



>mm_chr10_49166350_49167089
          Length = 740

 Score =  414 bits (214), Expect = e-120
 Identities = 287/340 (84%), Gaps = 52/340 (15%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaatttgtcttatttttgttgtttgtttttaatcacataagatttttgaaatataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atggaatttgtcttatttttgttgtttgtttttaatcacataagatttttgaaatataaa 330

                                                                       
Query: 61  tgaatataaatataggtaaatctgtgcaaaatagaacatttttatctaattcttataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgaatataaatataggtaaatctgtgcaaaatagaacatttttatctaattcttataaac 270

                                                                       
Query: 121 ctgatgaaaacttaa-ttttttccctaagggataattcatgtatctgtcacttaaacagt 179
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgatgaaaacttaatttttttccctaagggataattcatgtatctgtcacttaaacagt 210

                                                                       
Query: 180 tattcaggactttttttctttctttctctttctttctttctttctttctttctttctttc 239
           |||||||||                          ||||||||||||||   |||||   
Sbjct: 209 tattcagga--------------------------ctttctttctttct---tttct--- 182

                                                                       
Query: 240 tttctttctttctttctttctttctttctttctttctttttttttttttgctagtaatgt 299
           |||||   |||||   |||||   |||||   ||||       |||||||||||||||||
Sbjct: 181 tttct---tttct---tttct---tttct---tttc-------ttttttgctagtaatgt 141

                                                   
Query: 300 ttgactataaagcaaagagtttgtgtttttttcaccagac 339
           ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 140 ttgactagaaagcaaagagtttgtgtttttttcaccagac 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space:   241230
Effective search space used:   241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)