BAC Information

Click to search

BAC

Clone NameMSMg01-097B10
Chromosome10 (Build37)
Map Location 10,321,172 - 10,321,704
singlet/doubletsinglet
Overlap genenone
Upstream geneE130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32
Downstream geneEG382450, Grm1, Shprh, Fbxo30, Epm2a, EG666732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097B10.T7 (MSMg01no097_b10.b1)MSMg01-097B10.TJ (MSMg01no097_b10.g1)
ACCAG313609AG313610
length658673
length of high quality
(start - end)
39 (205 - 243)533 (56 - 588)
definitionCHROMAT_FILE: MSMg01no097_b10.b1 PHD_FILE: MSMg01no097_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:42 2005CHROMAT_FILE: MSMg01no097_b10.g1 PHD_FILE: MSMg01no097_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGATCCGCGGAATTCTCCCCGATATCCTACTAATGCTGCCAGAGCGGCT
TTACTTTTGGTGGAGCAGAGCATTCAAGATGCTGCCTTGAAACGCCGAGA
TGAGTCAAAGCCTATTGCATTGTGTATTTTGCCAACAGAATCACAACCAA
CAGGGGTCTTATGGCAAGGGGCTCCCTTGCTCTGGATACATCCAAAGATT
TCGCCAGCCAAAACACTTGTTCATTATCCTGCCTCAGTTGCTCAATTGGC
TTTGCTTGGTATTCAGCAAAGTGTGCAATTTTCTGGCATTCTGCCAGAGG
ATTTGCTAGTTCCATATAATGTTAAACAGCTAGAAGTGTCATCAGCTACA
GCAGATGAGTGGGCCATTTTGAGGTGCAGTTTTCAGGCCCAATTTGATCA
TGATTTTCCCAAAGATCCAATATTACAATTGATTAAAGCTCATCTTGTGA
TTTTCTTTCCCTCTCATTACTTCAGAACATCCTTTGCCGGACGCTCCACT
TATTTTTACAGATGGTTCTAAGACAGGACACGGAGCATATTTAGCAGCCG
GATCATCACCAGGCACCATAGAATTTCCCCCCCGGATCACCCCAAGTTAT
CCGCATCGCCCTCGAGATTAACGAGATTAAATTCAGTGCCACCCCCCGGT
ACGCCGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTGCCAGATGTTTAATGCTGGTGCAGGCTGGCCCGGCCTGCCTA
GCTCTGGTTCAGTGATTGGAGAAGCAGACATGTACATGAGGTCACCACAG
AGCAGACTCAGCCAAGATTCCAGAGCTTTGCTCAGTACATGACTGTCTAG
AGCACTGCCCAAGCCAACATCGGGATTGTCATGACCCCAAGTAAAACACA
TTGCAGTGGGAGGATTGCTTGTAATGAAATTTAATGATTAGTTCAATTAT
GATTCCACAAGAAAGGAGAATGTCACAAGCTATGTTGTGTACCTCATAGT
CTCTGGGATATGATCAATATAGAATGTACAGTCTCTGGGGTGTGATAGAT
ATTGAACAGCCTCTGGGATATGATAGATATTTTAAAGTACTTTAATCCTT
TGGTTCTGGAGAGATAGCTCAGGGGTTAATAGCTTTGGCTACTCTCAATG
AGGTCCTTGATTTCATCCTCAGAGCCTACATGGCAGTTCATAGTTATCTG
AAATTTGAATTCCAGAGGATCTGAGAGGCCCTCCTTGTGCACCAGGCACA
TACATGGTGATCTACACACTAAAATGCATGCGCAATTCCCATACGCCTAA
GAACGGAATAAATTATGTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_b10.g1 MSMg01no097_b10.g1 CHROMAT_FILE:
MSMg01no097_b10.g1 PHD_FILE: MSMg01no097_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:42 2005
         (533 letters)



>mm_chr10_10321104_10322037
          Length = 934

 Score = 1000 bits (517), Expect = 0.0
 Identities = 529/533 (99%), Gaps = 1/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgccag-atgtttaatgctggtgcaggctggcccggcctgcctagctctggttcagtg 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cttgccagaatgtttaatgctggtgcaggctggcccggcctgcctagctctggttcagtg 542

                                                                       
Query: 60  attggagaagcagacatgtacatgaggtcaccacagagcagactcagccaagattccaga 119
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attggagaagcagacatggacatgaggtcaccacagagcagactcagccaagattccaga 482

                                                                       
Query: 120 gctttgctcagtacatgactgtctagagcactgcccaagccaacatcgggattgtcatga 179
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 481 gctttgctcagtacatgactgtctagagcactgcccaagccaacatcaggattgtcatga 422

                                                                       
Query: 180 ccccaagtaaaacacattgcagtgggaggattgcttgtaatgaaatttaatgattagttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccccaagtaaaacacattgcagtgggaggattgcttgtaatgaaatttaatgattagttc 362

                                                                       
Query: 240 aattatgattccacaagaaaggagaatgtcacaagctatgttgtgtacctcatagtctct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattatgattccacaagaaaggagaatgtcacaagctatgttgtgtacctcatagtctct 302

                                                                       
Query: 300 gggatatgatcaatatagaatgtacagtctctggggtgtgatagatattgaacagcctct 359
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 gggatatgatcaatatagaatgtacagtctctggggtgtgatagacattgaacagcctct 242

                                                                       
Query: 360 gggatatgatagatattttaaagtactttaatcctttggttctggagagatagctcaggg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggatatgatagatattttaaagtactttaatcctttggttctggagagatagctcaggg 182

                                                                       
Query: 420 gttaatagctttggctactctcaatgaggtccttgatttcatcctcagagcctacatggc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttaatagctttggctactctcaatgaggtccttgatttcatcctcagagcctacatggc 122

                                                                
Query: 480 agttcatagttatctgaaatttgaattccagaggatctgagaggccctccttg 532
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttcatagttatctgaaatttgaattccagaggatctgagaggccctccttg 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)