BAC Information

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BAC

Clone NameMSMg01-097F17
Chromosome10 (Build37)
Map Location 84,665,219 - 84,665,680
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1
Downstream geneEG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097F17.T7 (MSMg01no097_f17.b1)MSMg01-097F17.TJ (MSMg01no097_f17.g1)
ACCAG313807AG313808
length659744
length of high quality
(start - end)
462 (40 - 501)69 (311 - 379)
definitionCHROMAT_FILE: MSMg01no097_f17.b1 PHD_FILE: MSMg01no097_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:04 2005CHROMAT_FILE: MSMg01no097_f17.g1 PHD_FILE: MSMg01no097_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCCAAAGGATCCGCGGAATTCACTTTATTTCCCAGGCTGGCCTAGAAC
TCACAGAGACCCACCTGCCTCTGCCTCCTGAGTTCTAGGAATAAAGGTAT
ATTCTACCACACCCAGCTTATAAATTACATTTGATCGGAAAAAAAATCAT
AAGAACAAAACGTTTCTATTTTTTATGGAAGCCTTCTGGATAGGATGCTA
CAAACAACATGAGTCCATTACACATAAATGGCTTCTTAGAAAAGGCTGGT
CCTCAGGGACCTTCCTGCTCTTAGGAGCTCTCCCTCCTGCTCCAAGTTCC
CAGTCTTCCTTCTTGAACCCTCAGATTGCATTGCAAGCAGGGCTCCCCCC
TCTTTGCCAATTCTGCTGAAAATGAACACTCTTAGGGAGGAAAGAACTTA
CAGCCCTCTCTTTTAGCTTGCTGTCTGTGAGAAGGAAAAGGGGCTGGTAA
GTGAGTGGTGTGTACAGAGATCACCTTTAAACTTCCGTTCGATGCATTGC
AGTGGGGAAATGTAAACTGCAGTCTCTCTTGTAAGCCTCAAGAGATTGAT
CTTCTTATTCTGTTGACAAATCTAGCAGTACATTCTAAAAAGGCGGGGGG
TGCTTGGGTTCATTATTCTCTACTCACACAGACTATAGTCCCTTTGACCA
GTCCTGCCT
AAAAAGAAAAAAAAANNAANANAGGGGAACGGAACCCAATCTCCCTCAAA
CNNCCCTCCAATGATATGGGTGGCCAGGGGGGGGCCTGGTTCCCGACCTG
ANGNGAANNANAGAAGTTCCAAGACCAGGGAGNNGNAGGCAAAGAACCAC
AGAGNGGGNCAGAGGAAGGGCACCGCCAGGACCGCNACCGGGGCCACAAA
ANNACGGGAACAGCCACCAAAAACCAGAGCACCGAGGGGGAGAGCCGGAG
NGGACGACCACGGAGGGCAGCCGCNAACCCAGACCCCGGNAGGAAGGCNG
GAGTTTTTTTCAGAGCTGGAGAAATAGGGTGGCTCACCTGTGGGCAGCAG
TGCAAGCACAGCGGAGATATTTTTTTTTTTGAGCAAAGGNCCCACCCAGG
GCCGCAGGCCTCTCTTTTCACCCCCCCGATCCTAGGTAAATGGNAGGGCT
CGCCTTGGCTGGTAACCAATCAGAGCTCGAGAAACTGATGTGCCGGAAGT
CACGCCTCCATCCCGAGCGTAGCCAATTAGAACACTGTGCACCGGTTCCT
GTGGGAATAAGTGTAGCACACCCGCAGGGTCTATTGCTACCAGCGCTACC
TGGTGCTTCTGTTTCAGCAAACTCTGGTGGATCGGTCTCCTTGTCCCTTA
GAGAACCTCACTACTCGTTGAGAGAAAGAGGCACGTAGGAGGGGCAGACC
ATACTTTGTTTTCTGGAAAGGGGACACCCCCACAAATCTGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_f17.b1 MSMg01no097_f17.b1 CHROMAT_FILE:
MSMg01no097_f17.b1 PHD_FILE: MSMg01no097_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:04 2005
         (462 letters)



>mm_chr10_84664940_84665801
          Length = 862

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcctagaactcacagagacccacctgcctctgcctcctgagttctaggaataaaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggcctagaactcacagagacccacctgcctctgcctcctgagttctaggaataaaggta 682

                                                                       
Query: 61  tattctaccacacccagcttataaattacatttgatcggaaaaaaaatcataagaacaaa 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 tattctaccacacccagcttataaactacatttgatcggaaaaaaaatcataagaacaaa 622

                                                                       
Query: 121 acgtttctattttttatggaagccttctggataggatgctacaaacaacatgagtccatt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 acgtttctattttttatggaagccttctggataggatgctacaaccaacatgagtccatt 562

                                                                       
Query: 181 acacataaatggcttcttagaaaaggctggtcctcagggaccttcctgctcttaggagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacataaatggcttcttagaaaaggctggtcctcagggaccttcctgctcttaggagct 502

                                                                       
Query: 241 ctccctcctgctccaagttcccagtcttccttcttgaaccctcagattgcattgcaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccctcctgctccaagttcccagtcttccttcttgaaccctcagattgcattgcaagca 442

                                                                       
Query: 301 gggctcccccctctttgccaattctgctgaaaatgaacactcttagggaggaaagaactt 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggttcccccctctttgccaattctgctgaaaatgaacactcttagggaggaaagaactt 382

                                                                       
Query: 361 acagccctctcttttagcttgctgtctgtgagaaggaaaaggggctggtaagtgagtggt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 acagccctctcttttagcttgctgtctgtgagaaggaaaaggggctgggaagtgagtggt 322

                                                     
Query: 421 gtgtacagagatcacctttaaacttccgttcgatgcattgca 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtacagagatcacctttaaacttccgttcgatgcattgca 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)