BAC Information

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BAC

Clone NameMSMg01-097J20
Chromosome10 (Build37)
Map Location 9,522,894 - 9,523,139
singlet/doubletsinglet
Overlap geneStxbp5
Upstream geneSash1, EG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417
Downstream geneLOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097J20.T7 (MSMg01no097_j20.b1)MSMg01-097J20.TJ (MSMg01no097_j20.g1)
ACCAG314000AG314001
length804790
length of high quality
(start - end)
246 (135 - 380)77 (209 - 285)
definitionCHROMAT_FILE: MSMg01no097_j20.b1 PHD_FILE: MSMg01no097_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:25 2005CHROMAT_FILE: MSMg01no097_j20.g1 PHD_FILE: MSMg01no097_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACAAATAAAATTATTTACATCTACTATCCTNATTTTACAANCNCCCGCCT
TCNNNNNNTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCACCCATATCTCGAAAAGTCTTGCTTTGCATAAA
TAAATGAGAATGCAGTTCGACTAATCTCAGTAGTGCCGCTCTGTGGGGAG
TGTCTCGGCTGCTGTCATCTGGAAGAGGAGCTGTGGTAGATGACTTCTTT
AGTCACTGTAACAGGCATCTGTAATGGACCAGGGAAAGGCCCTGCCCTCT
TCATGGATCTGAGGCATTAGTCCATAACCTGTCAGAGCTCACATCTGCAG
CGCACGCTCACTCGGGAGTCCATCAGTCCCACTGATTTTTTCTACATAGC
TGGGAATTGGTTTGATAGAAACTTTATTAGAGCCGCCCCCTTTGCCCTTT
TTGCCAATCTAAGTTTATGCTTTTTTATTTATGTATTGTAATTGTCCCTT
TACCCCGCACCTTGGGTCTTTTTTAATTGAGACCCCTTCCAGATATGAAT
CCGAACTTTTTAAAAATGAATTCAGGAGGAATTAACGGAAACATTTTAAA
GTAGCTCTACCCCAAACACTTTATCAAATAAAACAATTTCCCCTATTTTT
TAAATATCTTAATCTTATTCCCCAATATAATACCCAAATTTTTTCAAGAC
CTACCACAAATATGTGGGTTCTACAATATTACCCTCATGTACATTTCACC
TTACAAATAAAAATTCCCGACCACTTTTTATCACCACCTGGTTTTTTACA
TCCG
CAACCCCCAAAAACACACCAAATTAACAATCATCCCCCTCACACCTACCA
CACCCCGATGCTATGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACTCCACCAAATTAAAGTAG
TTAACTTTGAAAGCATTTGCTTGGTTTGCACTAACAAGTAAGAACATTTC
ATATCGCGAGATTTGAGGGGATTCATTTTGGAGCAAAAATATTACGAGGT
CTATTTCCTATTCACTCCAGATTTTATGTTTCTAAGACCTATATTACTGT
GTATACAAAGAAAAAAAACTGACATAGAATTAGAGAATTTAATGCAATAT
ACTATATGCACCCCAGGTCGCCAACAATCTTGTCTTGCCCATTACAGGCA
ACTCTGAAGGATCCTGCAATATCATCATCCCCATCTTCTCTGTGAAAATA
ATGAACGCATGGCCCTAAATCCGCAAAGGGGAAACACACACATCACAGGA
ATCGCCCATATTTAAGAAAATGACCTAAACGAACACGCAGCAAGAACGCT
TGAGCCAATAGTAAACGGCAAGCCACGTCCCATAAATAACTCTAGGCTGG
AGACACGGATGCCACACTCGCAATACGATCATATAAACCACTCTGATTAA
CCATACTTGAAAAATAAGGAGGCCAATTGATATAACTAGGGCCAAAACAA
ACCGGCAACAGATAAGTACCCAACGAAAGGGCAGAATTATTCAAAACAAT
CATAGTGGCACCCCCCCCCACAACCCCCCTGAGGAACATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_j20.b1 MSMg01no097_j20.b1 CHROMAT_FILE:
MSMg01no097_j20.b1 PHD_FILE: MSMg01no097_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:25 2005
         (246 letters)



>mm_chr10_9522694_9523339
          Length = 646

 Score =  424 bits (219), Expect = e-123
 Identities = 240/247 (97%), Gaps = 2/247 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgctttgcataaataaatgagaatgcagttcgactaatctcagtagtgccgctctgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 446 tcttgctttgcataaataaatgagaatgcagttcgactaatctcagtagtggggctctgt 387

                                                                       
Query: 61  ggggagtgtctcggctgctgtcatctggaagaggagctgtggtagatgacttctttagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggggagtgtctcggctgctgtcatctggaagaggagctgtggtagatgacttctttagtc 327

                                                                       
Query: 121 actgtaacaggcatctgtaatggaccagggaaaggccctgccctcttcatggatctgagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 actgtaacaggcatctgtaatggaccagggaaaggccctgccctcttcatggctctgagg 267

                                                                       
Query: 181 cattagtccat-aacctgtcagagctcacatctgcagcgcacgctcactcgggagtccat 239
           ||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catcagtcc-tcaacctggcagagctcacatctgcagcgcacgctcactcgggagtccat 208

                  
Query: 240 cagtccc 246
           |||||||
Sbjct: 207 cagtccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)