BAC Information

Click to search

BAC

Clone NameMSMg01-097P07
Chromosome10 (Build37)
Map Location 28,534,547 - 28,535,149
singlet/doubletsinglet
Overlap geneE430004N04Rik
Upstream geneLOC100040961, LOC100040401, Ptprk
Downstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P07.T7 (MSMg01no097_p07.b1)MSMg01-097P07.TJ (MSMg01no097_p07.g1)
ACCAG314258AG314259
length699694
length of high quality
(start - end)
607 (38 - 644)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no097_p07.b1 PHD_FILE: MSMg01no097_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:53 2005CHROMAT_FILE: MSMg01no097_p07.g1 PHD_FILE: MSMg01no097_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCGCGGAATTCA
CATTTGTTTCGCAAAGATCTGTGGCCAAGTTGCTTTCTAACTTCTGGTTG
AGCTCTACCTCAACCAGAAAGTAAAAATTATACTACTACTTTTGGTAGCT
ATTTTATTTTTTAAGGTAATACATCAAATGAAGATTTTAGTAAGGAACAA
AACATGTAAAATATATGTAAATAGAACATGTATTTTTAAGGATCCCACAG
AATTGGCCAAATGGTTTGAGCTAGTGGCCCTTTGCTTTCTGTACATTAAA
CAGAGAAGGAGGTTGTTTTAAACTCTCATAGTTGTATTTATTATGAATAA
ACAAAAATTAATGCCAAAACAAGGGTCTGTCCTTTGTTCAGTTATGTCTG
AAATGCTATACTTTAATGCCTTCTTTGTATTCCCTGACAAACCTCATAGA
GAATATCGAGCTGCACAAGTGAAGGAGAGGCACAATGGTGCCCAACATGC
TCACCAGCCTACAGGTCATCTCCAGACTACAGGTCATCACCAGACTACAG
GTCATCACCAGCCTACAGGTCATCCAGCCTACAGGTCATCACCAGCCTAC
AGGTCATCACCAGCCTACAGGTCATCACCAGCCTACAGGTCATCACCAGC
CTACAGGTCATCACCAGCCTACAGGTCATCACCAGCCTACAGGTCATCT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAATCTCTCCAAACTTTTAACATGAATG
GGTGTTGTATTTTGTCAAAGGCTTTTTTTTTTAATGGTATCTAATGAGAT
GATCATGTAGCTTTTTTCTTTGAGATTATATATATAGTATGTTGATGGAT
TGCCGTATATTGAACCATCCCTGCATCCCTGGGATGAAGCTTACTTGACC
TTGGTGAATGACGGTTTTGATATGTTCTTGTATTTGGTTTGGGAGAATTT
TATTGAGTATTTTTGCATATATATTCATAAGCAAGATTGGTCTGAAATTC
TCTTTCTTTGTAGGGCCTCTGCGCGGTTTGGGTATTAGAGTAACTGTGGC
TTCATAGAATTAATTCGGTAGTAGTCCTTCTATTCATGCAATAATTTGAG
GATTATAAGAATTAACTCTTCTTTGAAGGTCCGGTAGAATTTTGCACTAT
AGCCATCTGACCCAGGGTGGTGGTTGTTGTTGTTGGGAGGTTTTCGATTG
CAGGCTAAAATGGTGCCCCGTATCCCGCTTGACCCACCGTTAGGGCCGCT
CACGAAATCATACCTGTAAATGTCGATCCTCCCAACCCCAAGATGCATGC
TGGATACCCTTTGTGAAACACCCCGGGACCCCCCTTCTCGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p07.b1 MSMg01no097_p07.b1 CHROMAT_FILE:
MSMg01no097_p07.b1 PHD_FILE: MSMg01no097_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:53 2005
         (607 letters)



>mm_chr10_28534341_28535349
          Length = 1009

 Score = 1040 bits (538), Expect = 0.0
 Identities = 587/604 (97%), Gaps = 4/604 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcacatttg-tttcgcaaagatctgtggccaagttgctttctaacttctggttgag 65
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gaattcacatttgcttt-gcaaagatctgtggccaagttgctttctaacttctggttgag 751

                                                                       
Query: 66  ctctacctcaaccagaaagtaaaaattatactactacttttggtagctattttatttttt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ctctacctcaaccagaaagtaaaaattatactactacttttggtagctattttatttttt 691

                                                                       
Query: 126 aaggtaatacatcaaatgaagattttagtaaggaacaaaacatgtaaaatatatgtaaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aaggtaatacatcaaatgaagattttagtaaggaacaaaacatgtaaaatatatgtaaat 631

                                                                       
Query: 186 agaacatgtatttttaaggatcccacagaattggccaaatggtttgagctagtggccctt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agaacatgtatttttaaggatcccacagaattggccaaatggtttgagctagtggccctt 571

                                                                       
Query: 246 tgctttctgtacattaaacagagaaggaggttgttttaaactctcatagttgtatttatt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgctttctgtacattaaacagagaaggaggttgttttaaactctcatagttgtatttatt 511

                                                                       
Query: 306 atgaataaacaaaaattaatgccaaaacaagggtctgtcctttgttcagttatgtctgaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atgaataaacaaaaattaatgccaaaacaagggtctgtcctttgttcagttatgtctgaa 451

                                                                       
Query: 366 atgctatactttaatgccttctttgtattccctgacaaacctcatagagaatatcgagct 425
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 450 atgctatactttaatgccttctttgtattccctgacaaacatcatagagaatatcgagct 391

                                                                       
Query: 426 gcacaagtgaaggagaggcacaatggtgcccaacatgctcaccagcctacaggtcatctc 485
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct: 390 gcacaagtgaaggagaggcacagtggtgcccaacatgctcaccagcctacaggccatcac 331

                                                                       
Query: 486 cagactacaggtcatcaccagactacaggtcatcaccagcctacaggtcatc--cagcct 543
           ||| ||||||| ||||||||| ||||||| ||||||||||||||||| ||||  ||||||
Sbjct: 330 cagcctacaggccatcaccagcctacaggccatcaccagcctacaggccatcaccagcct 271

                                                                       
Query: 544 acaggtcatcaccagcctacaggtcatcaccagcctacaggtcatcaccagcctacaggt 603
           ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| 
Sbjct: 270 acaggccatcaccagcctacaggccatcaccagcctacaggccatcaccagcctacaggc 211

               
Query: 604 catc 607
           ||||
Sbjct: 210 catc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1009
Length adjustment: 10
Effective length of query: 597
Effective length of database: 999
Effective search space:   596403
Effective search space used:   596403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)