BAC Information

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BAC

Clone NameMSMg01-097P24
Chromosome10 (Build37)
Map Location 17,240,298 - 17,240,716
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P24.T7 (MSMg01no097_p24.b1)MSMg01-097P24.TJ (MSMg01no097_p24.g1)
ACCAG314292AG314293
length7511,316
length of high quality
(start - end)
420 (111 - 530)---
definitionCHROMAT_FILE: MSMg01no097_p24.b1 PHD_FILE: MSMg01no097_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:57 2005CHROMAT_FILE: MSMg01no097_p24.g1 PHD_FILE: MSMg01no097_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCACCATTAATACCNNCANTCTTAACTCTATTTCTATCCTCCCCTCTT
TGTTTCGTNNTCTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
AGAGAAGCCGCGGAATTCCTTAAGATTCCCTACTAATCCTGTACATCTCA
AGAGAAGAAAGAAAATAAATGGATCTCAGACAGTAAGTCTTCCATGAATT
TTAAGAGGCATTTGGACAGAAAAAGCTGTCGTCTGCTGAGCTCCAAGTAG
GATCCTGGACAAAATCCTCTTATATCCAGTCTCCCACGTGTTCTCTCTTC
CCAGCCATTACAGTGGCTGTTTTATTTGATTGTAACAATTTATTCAAGTC
TGTTTCCTCTCTTACGACCATTTTGTCTCCTCTCTATTACACTGGCCTTG
TGAATATAGCTGTGTCTTTTTTCCCCCCAATCTCTAGCTCCACAGTCCAG
TATGATGCCTAAAACACAGTAAAAATTCAATAATTCTTGCCGAACGTCTC
AGTGAAAGGGTTGGGGTAATGGATGGGCAGACAGACAGATGCTATGTAGA
ATAACATTGTTTTGAGGACAAAGGTTATATTTTGACCAAACTAATTTAGC
GTTTTCTGAAGCCTATTTTTGAAGTCCAAATGACTATTCTTGATGGAATC
TCTCTAATCAGGCCCCCATTTTTGCTTAAACCAGCTTATTCTGATTGACT
AATACAGTTTTTCTTCTTTGCCCACTTGTCTTGCCCTAAATGTATGACCG
C
CAACACGACCACATACGAACACCCGCAGCAACAAATCAAACGTGGAGCTT
CCACGCGACCTCCCGCTCTTGCCGCCCGCCCGCGGAATACGACCAAAGAG
GCNCGCGGACTGCGGCTGGTGTAATATATCCCCTCGTTATGCATCCAACA
GACGTGCGGTTGATAANCGTGTGGTGTGTGGGGAATAATATAACATTATG
TGCTCAACATAATTTATAATTCAACCCTCATATAAATACGCGCTGCGATG
GTAAATAAACCACCACACCTGTTATTACCCCCATCCCTACATGTTGTTTT
CATATACACACTTGATACCAATACCTTCGACGTATTCTCTTTTATTTTAT
ATAGTACCACGTGATATAAAATGTGTGTAGCTGCTCGGCGTATACCCATC
AAGACCATGAGTTGCGGCTAACAATTTTCTTTCTTCTCTTAACCACACAA
CCATTATGCCCTCACGCACGCATATATTCTTCTCTTGCAATAATCGGTAA
ACAAAGAATCACGGAGTGAACGAACAAACTCACTGNGTGTGGCGGTGAGA
CGGATACTATGTGTGGCGCGTGTGGTATAAACAAACTTGGTAGGAACCAT
TTGAGTTGACAATTGGATTTGGGTCGATGGGATCGGCGATCATCGCCCGC
TGCAGATATATTGTGAATTACGACATTTGTCCGTGTTTAATGCCGCCGAT
GTGGCGTCTCACACCCGCACTGAATCCCCGCGCGTATAATCTGCGGTATT
CTTGACCGGTCGAGAATATACCCGCCGCTGTCTGCGCGGCGTGGGGGATA
TAANCGCGAGGATTTAACACAATATGGCGTGTGATCGTGTCTATTGTGTG
TAGTATTCGCGCATATGTGTGTGGTGTGCGCGGCGCGTGGTAATGACTAC
ACGAGTTGGTGGAACATAAAACTACCATGCTCGCGTGGATCCACCTGTCG
GGTGNCGGGGTGTGTGGTTAACATATAATACGAGGCGCGCAAACAAACTG
ATATACGAGTGTGTCGACATGTGGCCGCGTGACGAAAAAGCTAACATACA
GGGTGGGTGCGCGGCGGAACACACCATATACCTCACGTCTATGTTTATCA
TCACGTNGTGGGGTGTGATATGCGGTTGATTANTGATAACAACCACCCGC
GCTCGTCGTTAGCCACGCGCGCTTGCGTATATGTGTGGTGTAATATTGTG
ACATATACCACTGGAGGCGACGTATACTGTGGTGAGCGGAGCTAAACACA
TAAATAAACTCCCCGAGCGCCGTACCCGNGCTAGAATACCACACTATCAC
ACATCAATATGAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p24.b1 MSMg01no097_p24.b1 CHROMAT_FILE:
MSMg01no097_p24.b1 PHD_FILE: MSMg01no097_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:57 2005
         (420 letters)



>mm_chr10_17240096_17240916
          Length = 821

 Score =  717 bits (371), Expect = 0.0
 Identities = 407/419 (97%), Gaps = 1/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccttaagattcc-ctactaatcctgtacatctcaagagaagaaagaaaataaatg 61
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccttaagatagcactactaatcctgtacatctcaagagaagaaagaaaataaatg 262

                                                                       
Query: 62  gatctcagacagtaagtcttccatgaattttaagaggcatttggacagaaaaagctgtcg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gatctcagacagtaagtcttccatgaattttaagaggcatttggacagaaaaagctgtcg 322

                                                                       
Query: 122 tctgctgagctccaagtaggatcctggacaaaatcctcttatatccagtctcccacgtgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctgctgagctccaagtaggatcctggacaaaatcctcttatatccagtctcccacgtgt 382

                                                                       
Query: 182 tctctcttcccagccattacagtggctgttttatttgattgtaacaatttattcaagtct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctctcttcccagccattacagtggctgttttatttgattgtaacaatttattcaagtct 442

                                                                       
Query: 242 gtttcctctcttacgaccattttgtctcctctctattacactggccttgtgaatatagct 301
           ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 443 gtttcctctcttaggaccattttgtctcctctctaggacactggccttgtgaatatagct 502

                                                                       
Query: 302 gtgtcttttttccccccaatctctagctccacagtccagtatgatgcctaaaacacagta 361
           |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 503 gtgtcttttttccccccaatctctagttccacagtccagtatgatgcctagaacacggta 562

                                                                      
Query: 362 aaaattcaataattcttgccgaacgtctcagtgaaagggttggggtaatggatgggcag 420
           ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct: 563 aaaattcaataattcttgctgaatgcctcagtgaaagggttggggtaatggatgggcag 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)