BAC Information

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BAC

Clone NameMSMg01-098F03
Chromosome10 (Build37)
Map Location 55,166,768 - 55,167,299
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041898, LOC382460
Downstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098F03.T7 (MSMg01no098_f03.b1)MSMg01-098F03.TJ (MSMg01no098_f03.g1)
ACCAG314532AG314533
length717703
length of high quality
(start - end)
548 (43 - 590)467 (56 - 522)
definitionCHROMAT_FILE: MSMg01no098_f03.b1 PHD_FILE: MSMg01no098_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:23 2005CHROMAT_FILE: MSMg01no098_f03.g1 PHD_FILE: MSMg01no098_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXAAGCAAAAGAGGATCCGCGGAA
TTCCTCCTTCCCAAATCATCCTGTGGCCATTTATTCAAACTGTTCTTTCA
GATGTGGTCATTATAACTTGAACTTTGTACATGAGTTGATCTAAATTTTT
TTCTTTTTATATACAATATAGCAAAGCTAAAAATTTTGAAAATACTGGGA
AGAGACATTTATTGACATTTACAAACATTGATTAATAATAATCATTTGGT
CCTTTTGTTAAATTCCAATTCCTATCTCTCTCATTCCTTATTTTTGAGCA
TATTTTCTACACATCATTTTTTATTAATACTCTCCTCAACAGTTAGTGAA
CTTTATGTAATAAGTATTATTCTTTGGGGATTAATTTTGGAAATTCTTCC
TAAACCAGTTTTGGGGAAAACTGAGCAAGAAGAAACTGAAAAAAAAAAGC
ATATCTTTATCATAAAATATTTCTTCTCCTACAAACTACTTAATGCAGTC
ATTTTTATGAAGTATTCATCTTTTGGCTTCTCTAACATACCAATGTCTAC
AAATACAGCCCCTGAGATTCAAGGAGTTCTGTTAGTATTGTAAATCAGCT
GAAGGGGCTTCCTCTTCCTACATGTCTAAACACACACACTCAAACATACA
TAGGTGTAGTAATCCAGGAGTTCTTTGGAGACACAACAGAAACTCCTAAT
TCTAAAGGTAGGCCATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGCAAATTCCTTATTTTCTCCTCTATCAGATTCATTATGTTAAGT
CTGTGCCAATGTTGTTGATTAGTTGTCCTTGAGTTTTGTGCACAGTGATA
GCCTTCATACTTATCTGAAAAGCTATTGGCTTTGATGGCTGCTGGAAGAG
AGTTAGTTCTTGTTAGAGGTGTGCCACTGACAGGTTGTTCATGCTCATGT
GGATGGCCACACATCCATGTGCCTACTGGAAGCACAAACTGAACTCAGTG
GGCTATATATTTACTTTTTTAAGGAACATGTACCTTGGAAAGGGGACTCA
GTATGGGAAGAATTAGAAGAGGAGATTGGAGAAGGACAAAACAAAAAGAT
ACTGTATACATGAACAATGTCTCAAGTAATAAAAAAATAGTTTTAATTGA
AACTTTAATTTTGTTGTGCTTTCTGTATCCCATTCTCACTAACATTGTGT
TTGATAAATGCTTTTTTTTGTTTTTTTTGTTTTTTTGGCTTTTTTTCAGA
AAACTTCCTTTTGAGACCATGTCTATGATTTGCTGGGTGACCTATAACTC
ACTGCGTAAACCCTGCTGGCTTCAATATCAGAAATATCCATCTCCCTCTG
CCTTACCAGTGCTGGGTTTTATTCTTGTGCCCCCCTGTTTACTTTATTTT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_f03.b1 MSMg01no098_f03.b1 CHROMAT_FILE:
MSMg01no098_f03.b1 PHD_FILE: MSMg01no098_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:23 2005
         (548 letters)



>mm_chr10_55166397_55167342
          Length = 946

 Score =  959 bits (496), Expect = 0.0
 Identities = 527/544 (96%), Gaps = 13/544 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctcctt-cccaaatcatcctgtggccatttattcaaactgttctttcagatgtg 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattcctccttccccaaatcatcctgtggccatttattcaaactgttctttcagatgtg 844

                                                                       
Query: 65  gtcattataacttgaactttgtacatgagttgatctaaatttttttctttttatatacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gtcattataacttgaactttgtacatgagttgatctaaatttttttctttttatatacaa 784

                                                                       
Query: 125 tatagcaaagctaaaaattttgaaaatactgggaagagacatttattgacatttacaaac 184
           |||||||||||||||| ||||||||||||||||||||          |||||||||||||
Sbjct: 783 tatagcaaagctaaaatttttgaaaatactgggaaga----------gacatttacaaac 734

                                                                       
Query: 185 attgattaataataatcatttggtccttttgttaaattccaattcctatctctctcattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 attgattaataataatcatttggtccttttgttaaattccaattcctatctctctcattc 674

                                                                       
Query: 245 cttatttttgagcatattttctacacatcattttttattaatactctcctcaacagttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cttatttttgagcatattttctacacatcattttttattaatactctcctcaacagttag 614

                                                                       
Query: 305 tgaactttatgtaataagtattattctttggggattaattttggaaattcttcctaaacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgaactttatgtaataagtattattctttggggattaattttggaaattcttcctaaacc 554

                                                                       
Query: 365 agttttggggaaaactgagcaagaagaaactgaaaaaaaaaagcatatctttatcataaa 424
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 553 agttttggggaaaactgagcaagaagaaactg--aaaaaaaagcatatctttatcataaa 496

                                                                       
Query: 425 atatttcttctcctacaaactacttaatgcagtcatttttatgaagtattcatcttttgg 484
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 495 atatttcttctcctacaaactacttaatgtagtcatttttatgaagtattcatcttttgg 436

                                                                       
Query: 485 cttctctaacataccaatgtctacaaatacagcccctgagattcaaggagttctgttagt 544
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 435 cttctctaacataccaatgtctacaaatatagtccctgagattcaaggagttctgttagt 376

               
Query: 545 attg 548
           ||||
Sbjct: 375 attg 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 946
Length adjustment: 10
Effective length of query: 538
Effective length of database: 936
Effective search space:   503568
Effective search space used:   503568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)