BAC Information

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BAC

Clone NameMSMg01-098H24
Chromosome10 (Build37)
Map Location 10,903,291 - 11,034,383
singlet/doubletdoublet
Overlap geneShprh, Fbxo30
Upstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
Downstream geneEpm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098H24.T7 (MSMg01no098_h24.b1)MSMg01-098H24.TJ (MSMg01no098_h24.g1)
ACCAG314664AG314665
length711700
length of high quality
(start - end)
581 (36 - 616)289 (56 - 344)
definitionCHROMAT_FILE: MSMg01no098_h24.b1 PHD_FILE: MSMg01no098_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:38 2005CHROMAT_FILE: MSMg01no098_h24.g1 PHD_FILE: MSMg01no098_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,903,291 - 10,903,868)(11,034,095 - 11,034,383)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAA
GATCCCGGCTCACTGGTGACATGTTAATGTCTTTTTATCCTATAAGGAAG
AAATCTTTAGGCTTTTTAAATTTTGTGGCTTCAGCATACCATTTTTTCTT
TTGATTGTTTATTTTAGGAATTTCTAGAATATTTTTTATAATACAAAATT
CTATGTTTGTATCAAGGAACTTTAACTATATGGAGCGACCACATTGTTCC
TGAAACACAATACTAAATTATGATCAAGATCTTGAGTGAAAGTGTTATTG
ACTTGCTATCTCCACACAGGCCAAGCAGCTGCGAGAGCACTATATGAGTA
AGTGTAACACAGAAGTTGCCGAAGCCCAGCAAGCTTTGCAGCCTGTGCAG
CAGTCCATTAGGGAGCTCCAAAGGAAGGTACGTGTCACCCAGTAGCATTT
TGGATCTATTTATTTGTGTTTTGTTTGAACTTTTTGTTTCCCTTCAAATT
CTTAGCAGTTACTTGAGTGACACAGATATCTTAGTTGACTTTTCTGTTGC
TTTCACCAAACACCTTTACCAAGACAACTTATGCAAACAATTGAATTATT
TAATTGGACTTGGTTTCAAAGGTCAGATGGCAGAGTATAGGCACTGAGAC
TGATACAGCTGAGAGCTCATGTGTCGTCCCCCCCAACTCCCCTTGGATAC
AATATTTTTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTGGGCAAAAGATAATGGCATGTTTCATAGGCACCTCTGTTTTC
TGCCCTTGAAGCAGTGCCCTTCCCCTCTGAGACTGAAGGGGTGCGGTTAT
TTTAGATGATAGGGATACAGCCTAGCTGAAGAACTGCATTTTTATTTCAG
TGTTTTATCCAGAAGGTACTTGCTTGTCACTTAGATGGGGCTCAAGGAAA
ACACTTGAAGAGTCCCTGCACAGCCTTGATACCATGAACACCAGGGGCCC
CAGTATAGCTCCCAAACAAAAAACTACGAGAAATCATGTATTAGAACAGA
AGTCAGAGCTGAGGAAAATGCCAGTAAGGGACACTATAAATGCACCAATG
CAGCAATAATGCTTCTTTGAACTACTAGAAGTTAATACCTCAGGAATGTG
AAATTACATCACCTTCCAGATCTTTTTCTGGTTTCTTATAATCAACTTCC
TATAAGCATCACATGCCCTAAGCTCAACAACAAATCACCTTTTCAAGCCA
CTCACTGGTTTTCCAGAAATATCTGACAGAGGAACTACAAATAGAAGTCA
AAGTCAATATGTAGGGAATGATATTAATCCAACACCCACTTTTCTGGGAC
AAGCACTAGACCAATTATCACTGTGGCTCCATTTACTGTCACAGATTTAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_h24.b1 MSMg01no098_h24.b1 CHROMAT_FILE:
MSMg01no098_h24.b1 PHD_FILE: MSMg01no098_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:38 2005
         (581 letters)



>mm_chr10_10903088_10904068
          Length = 981

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtaagatcccggctcactggtgacatgttaatgtctttttatcctataagga 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtaagatctcggctcactggtgacatgttaatgtctttttatcctataagga 263

                                                                       
Query: 64  agaaatctttaggctttttaaattttgtggcttcagcataccattttttcttttgattgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaaatctttaggctttttaaattttgtggcttcagcataccattttttcttttgattgt 323

                                                                       
Query: 124 ttattttaggaatttctagaatattttttataatacaaaattctatgtttgtatcaagga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttattttaggaatttctagaatattttttataatacaaaattctatgtttgtatcaagga 383

                                                                       
Query: 184 actttaactatatggagcgaccacattgttcctgaaacacaatactaaattatgatcaag 243
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actttaactatatggagcaaccacattgttcctgaaacacaatactaaattatgatcaag 443

                                                                       
Query: 244 atcttgagtgaaagtgttattgacttgctatctccacacaggccaagcagctgcgagagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcttgagtgaaagtgttattgacttgctatctccacacaggccaagcagctgcgagagc 503

                                                                       
Query: 304 actatatgagtaagtgtaacacagaagttgccgaagcccagcaagctttgcagcctgtgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actatatgagtaagtgtaacacagaagttgccgaagcccagcaagctttgcagcctgtgc 563

                                                                       
Query: 364 agcagtccattagggagctccaaaggaaggtacgtgtcacccagtagcattttggatcta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcagtccattagggagctccaaaggaaggtacgtgtcacccagtagcattttggatcta 623

                                                                       
Query: 424 tttatttgtgttttgtttgaactttttgtttcccttcaaattcttagcagttacttgagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttatttgtgttttgtttgaactttttgtttcccttcaaattcttagcagttacttgagt 683

                                                                       
Query: 484 gacacagatatcttagttgacttttctgttgctttcaccaaacacctttaccaagacaac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gacacagatatcttagttgacttttctgttgctttcaccaaacacctttaccaagacaac 743

                                                 
Query: 544 ttatgcaaacaattgaattatttaattggacttggttt 581
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttatgcaaacaattgaattatttaattggacttggttt 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no098_h24.g1 MSMg01no098_h24.g1 CHROMAT_FILE:
MSMg01no098_h24.g1 PHD_FILE: MSMg01no098_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:38 2005
         (289 letters)



>mm_chr10_11033895_11034583
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgggcaaaagataatggcatgtttcataggcacctctgttttctgcccttgaagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 489 actgggcaaaagataatggcatgtttcataggcacctctgttttctgtcctttaagcagt 430

                                                                       
Query: 61  gcccttcccctctgagactgaaggggtgcggttattttagatgatagggatacagcctag 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 429 gcccttcccctctgagactgaaggggtgtggttattttagatgatagggatacagcctag 370

                                                                       
Query: 121 ctgaagaactgcatttttatttcagtgttttatccagaaggtacttgcttgtcacttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctgaagaactgcatttttatttcagtgttttatccagaaggtacttgcttgtcacttaga 310

                                                                       
Query: 181 tggggctcaaggaaaacacttgaagagtccctgcacagccttgataccatgaacaccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tggggctcaaggaaaacacttgaagagtccctgcacagccttgataccatgaacaccagg 250

                                                            
Query: 241 ggccccagtatagctcccaaacaaaaaactacgagaaatcatgtattag 289
           |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 249 ggccccaggatagctcccaaacaaaaaactacgagaaatcacgtattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)