BAC Information

Click to search

BAC

Clone NameMSMg01-099N12
Chromosome10 (Build37)
Map Location 30,238,675 - 30,238,875
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
Downstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099N12.T7 (MSMg01no099_n12.b1)MSMg01-099N12.TJ (MSMg01no099_n12.g1)
ACCAG315686AG315687
length734710
length of high quality
(start - end)
207 (50 - 256)370 (78 - 447)
definitionCHROMAT_FILE: MSMg01no099_n12.b1 PHD_FILE: MSMg01no099_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:30 2005CHROMAT_FILE: MSMg01no099_n12.g1 PHD_FILE: MSMg01no099_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCGTGCAATTCCATCAAAGGAACCTTCAGCTTATGACATGT
ATAGTGTCCACCCTCTGGAGAGTGTATTTTGGTGAACTGCATATCTGTCT
GGGGGCACCAATTCTATTAGCTGCTCTCTTTAGAAATCTTAGGAGATGGT
TTGAGTGTTCCATTGATTGAAAGGGATTTAGGTGTTTTGGTTTTTTGGTT
ATTTGCTTTCCATGTGTCGAAACAGACCCCATCCTGTTCTCATGATTACT
GTGAGACATATAATAATCCTACTGTCTTTTTTTTACACTATGTTGTGTCG
ATGATCCAGCTGTATCATTCTGTTCCCGCCTATCTCGTCCGAAAGCTCAA
TCCTACCAGGTATTGGCCACCCCCCCCCCCCGTCCTTACCCCTTTGTTCC
TGCAAACCCCATCTTGCATATAATTTTTTACACCCTTGTTCTTTTGCTAG
ACCCCCCTTCCTCTTTTTGTATTCCTCCTCTTACTCTTATTTACTGGCAT
CATATTTTATTCCCCTCCCCTTCTCATGTTTCTTATTCCTTTACCCCCAC
TATGTCCTTTTTCTTCTTTCTCCCATCTTCCGACCCTCCTTTTACCCTGT
TCCTCTCTTTTTATCCCTCTTACTCTCCCCCACCATTCTTCTCATCTTTT
TTTCTTCGCCACACCCCCGTTTTTTTTTATATTT
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACTCTGTA
TTTAATATGTATAATTGATTCTCTAGAGTCTAACTTCTTGAGTTCTTTGT
ATATATTGGATAATAGCCCTCTATTAGATGTAGGATTGGTAAAGGTGTTT
TCCCAATCTGTGGGTTGCGGTTTTGTCCTATTGACAGTGTCCTTTGCCTT
ACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTGTTGATCTTA
GAACACAAGTTATTGGTGTTCTATTCTTGAAAATTTCCCCTGTGCCCATG
TGTTCAATGCTCTTCCCACTTCCTTTTCTATTTGTTTCAGTGTCTCTGTT
TTTATATGGTGGTCCTTGATCCACTTATAATTGGGCTTTATACCAGGAGA
TTAAGAATGTATCAATTTGCATTTGTCTACTTGATTGCCAGTTGAACCAA
CACCTTCTTGTTGAAAATGCTTTTTTCCACTGGATAGTTTTAGCTCCTTC
TGTCTAAGATCCAGCGACCACACGGGTGTTGTGTGTATGTCGAGCGTGTC
TTGTTTTTTTCTCTCTCCCCTTTTATCTTTTCTCCCCCCCTCTCTTCTTA
CTTCTTCCCCTTTTTCTTCCTCTCCTCCTCCTTTTTTCTCTCTCTCCTTC
CCTCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_n12.b1 MSMg01no099_n12.b1 CHROMAT_FILE:
MSMg01no099_n12.b1 PHD_FILE: MSMg01no099_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:30 2005
         (207 letters)



>mm_chr10_30238471_30239077
          Length = 607

 Score =  366 bits (189), Expect = e-106
 Identities = 198/201 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcgtgcaattccatcaaaggaaccttcagcttatgacatgtatagtgtccaccc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaattctcgtgcaatttcatcaaaggaaccttcagcttatgacatgtatagtgtccaccc 346

                                                                       
Query: 65  tctggagagtgtattttggtgaactgcatatctgtctgggggcaccaattctattagctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tctggagagtgtattttggtgaactgcatatctgtctgggggcaccaattctattagctg 286

                                                                       
Query: 125 ctctctttagaaatcttaggagatggtttgagtgttccattgattgaaagggatttaggt 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 285 ctctctttagaaatcttaggagatgctttgagtgttccattgattgaaagggatttaggt 226

                                
Query: 185 gttttggttttttggttattt 205
           |||||||||||||| ||||||
Sbjct: 225 gttttggttttttgtttattt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)