BAC Information

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BAC

Clone NameMSMg01-102B04
Chromosome10 (Build37)
Map Location 15,204,931 - 15,205,380
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC637043, LOC100039492, LOC671439, LOC382457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102B04.T7 (MSMg01no102_b04.b1)MSMg01-102B04.TJ (MSMg01no102_b04.g1)
ACCAG317319AG317320
length691705
length of high quality
(start - end)
510 (32 - 541)449 (78 - 526)
definitionCHROMAT_FILE: MSMg01no102_b04.b1 PHD_FILE: MSMg01no102_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:32 2005CHROMAT_FILE: MSMg01no102_b04.g1 PHD_FILE: MSMg01no102_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCGCTAAACGACTACTATTCGAAGAGGATCCGCGGAATTCTCTGTT
TCCCTCTGTCCTCCATTTATAATAGGGTTATTTGGTCGTCTGCTGTCTAA
CTTCTTGACTTCTTTGTATATATTGGATATTAGCCCCTATTGGATGTAGA
ATTGGTAAATATCTTTTCCCAATATGTTCATTGTCATTTTCTCCTATTGA
CAGTGTCCTTTCCCTTACAGATACTTTTCAATTTTATAAGGTCCCATTTG
TTGATTCTTGATCTTAGAGCATAAGCCCTTGGTGTTTTGTACAGGGATTT
CTCCCCTGTGTCTATGTGTTCGAGGCTCCTCCCCACTTTCTCTCTTATTA
GTTTCACTGTATCTGGTTTTATATGGAGGTCCTTGATCCACTTGAAACTG
AGCTTTGTAAAAGGAGATAAGAATGGATCAATTTGTATTCTTCTATATGC
TGACCACCATGTAAACCAGACCATTTGTTGAAAATGCTATTTTTCCACTG
AATAATTTTAGCTTCTTTTGTCGAAGATCAAGTGACCATAGATGTGTGGG
TTTATTTCTGGGCCTTCAGTTCTATTCCATTGATCTTCCTGCCTGTCTCT
GTACCAATACCATCGAGTTTTTATGACTATTGCTCTGAAATATAGCTTGA
GGCCCAGGATGGTGAATCCTCCAGAAGTTCTTAATTTGTGA
NCCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAAAATTGTTCCTGGAATGTG
TTTTTGTTTTCCTTCCAGATGTAGAGGATAAGAGCATGCTTACTTCAGGT
TGTGTATTATTTCTTGCAGTTGTTATTCATTAAATTAAATGTTTAAACTA
TACTTATTTTTTATGTAAAAGTATTTTTTGCCACCTGTGATTTGTCTTTG
TGATTGTATACAGCTTGAAGTCTTAAGAACTTCACTTGTTTGACCTTTCT
TAACTCCAGCATATTTTTTCTTCTATTGGAAAATTTTTTTTCTCATTAAT
ATACATGGCTTATAGTTTTCCCTTCCTCTGCTCCTCCTAATTCCTCTCCA
GTTTTGCTCTCATGAAAATCCCCTGCTTTCTGTCTTTTATTAGAAAACAA
ATTTCTATGAAATAATAAATTATAATGAGATAGAACAAAACCTAACATAT
TAGAATAGTACAAAAAAAAGAGAAAGAAAAAGGACAAAGTAAAGACACAG
ATATAGATGCAGAAATCTATTTGCTTTCACATAAAATATTAAATTGTAAT
CCATAATATATATGCAAAGGAACTGTAGGGTAAAAACAGATAAAATATAT
ATAATTAAATAAAAGTTAAAAAGAGAGATAAAAGAAAGAATAAAATCTAA
AGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_b04.g1 MSMg01no102_b04.g1 CHROMAT_FILE:
MSMg01no102_b04.g1 PHD_FILE: MSMg01no102_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:32 2005
         (449 letters)



>mm_chr10_15204731_15205577
          Length = 847

 Score =  787 bits (407), Expect = 0.0
 Identities = 440/453 (97%), Gaps = 7/453 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaaaattgttcctggaatgtgtttttgttttccttccagatgtagaggataagagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaaaattgttcctggaatgtgtttttgttttccttccagatgtagaggataagagcat 260

                                                                       
Query: 61  gcttacttcaggttgtgtattatttcttgcagttgttattcattaaattaaatgtttaaa 120
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttacttcaggttgtgtgttatttcttgcagttgttattcattaaattaaatgtttaaa 320

                                                                       
Query: 121 ctatacttattttttatgtaaaagtattttttgccacctgtgatttgtctttgtgattgt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ctatacttattttttatgtaaaagtattttt-gccacctgtgatttgtctttgtgattgt 379

                                                                       
Query: 181 atacagcttgaagtcttaagaacttcacttgtttgacctttcttaactccagcatatttt 240
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 atacagcttgaagtcttaggaacttcacttgtttgacctttcttaac-ccagcatatttt 438

                                                                       
Query: 241 ttcttctattggaaaattttttttctcattaatatacatggcttatagttttcccttcct 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcttctattggaaa-ttttttttctcattaatatacatggcttatagttttcccttcct 497

                                                                       
Query: 301 ctgctcctcctaattcctctccagttttgctctcatgaaaatcccctgctttctgtcttt 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 498 ctgctcctcctaattcctctccagttttgctctcatgaaattcccctgctttctgtcttt 557

                                                                       
Query: 361 tattagaaaacaaat----ttctatgaaataataaattataatgagatagaacaaaacct 416
           ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tattagaaaacaaacaaacttctatgaaataataaattataatgagatagaacaaaacct 617

                                            
Query: 417 aacatattagaatagtacaaaaaaaagagaaag 449
           |||||||||||||||||||||| ||||||||||
Sbjct: 618 aacatattagaatagtacaaaacaaagagaaag 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 847
Length adjustment: 10
Effective length of query: 439
Effective length of database: 837
Effective search space:   367443
Effective search space used:   367443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)