BAC Information

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BAC

Clone NameMSMg01-104I17
Chromosome10 (Build37)
Map Location 19,726,037 - 19,726,188
singlet/doubletsinglet
Overlap geneMap3k5
Upstream geneTnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7
Downstream geneMtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202, Ahi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104I17.T7 (MSMg01no104_i17.b1)MSMg01-104I17.TJ (MSMg01no104_i17.g1)
ACCAG319130AG319131
length709718
length of high quality
(start - end)
154 (154 - 307)439 (70 - 508)
definitionCHROMAT_FILE: MSMg01no104_i17.b1 PHD_FILE: MSMg01no104_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:50 2005CHROMAT_FILE: MSMg01no104_i17.g1 PHD_FILE: MSMg01no104_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAATAATTATCTCGTTAGGAGTGCAGGAGAGGGATTGAGGTGAGG
GGTAAGAAGTCACATCTCTGATGTACCGCAAGTTTATTGAGTACACAGGG
CAGGCACATGCTCATATTTTAGACATTTTATATTGAAATACTTGATAATT
AACAGTTCTGAAGGAAATGATTGTCTATGCCTATGTACGCCAGGATAACT
GAATACATTTTGGGCATTTGAACTCCCAAATATTGTTAGTTTCTTTTCCC
TCCTGCTCCGTCTGTGACCGGAGGTCTCACATGCATCTTTTTCCCTTTCC
GATAGAGCATCTGCCTTTCTCCCACTTGTTCCACGGCGGATGAATTGATT
CTCCCGAGATGATTACCCTCATGCTCTATGCCGATGTATCCCGTGCCATA
CGCAACTGCTGTTCGTGGTTTTTTGTCTGTGTTTACCCCATATTCCTGCT
TGGACCTGTTGCGACGTGAATCGTCTGATTCCCCCTGCCCTCCTCTTTAA
TTTCCGGTCGCCTCCTGATTTGTTTCCCTCCTAAACAACTTTTTCCCCTC
TCTCGCGCTCCACCTTTCATTTCATATACCGCCTATTTTACCCTCTCCTC
TTTGCATTCTGTTCTTCACTCATATTATACTTTCTTACAACTTTTATTTT
ACACTTTCT
ATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGTGCACACACGTAAAGGCCTGAGGACAA
CTGTGGAATCTTTTCTGTCCTTCCACCCTCACGTGTGAGTTCTGGGGATT
GACAGATCATCCCAGGCTACCCACTGAGTCATCCCACCGGCCCACAGTCA
GGTGCTCCGGAGTGACATCTACCCTGAGATAGGTAGCAACTGAGCCTTCA
CTAAGTACCTTGCCTGTGCTGTCCTCATTTAATTCTCAGAACAAGCCTTT
GAGGAAGGCACACCATTTCCCCATTTCACAGGAGAGAATTGAGACTAAGA
GGCTATTTGTCAAAGGCCAAAGTTAGGTGGGAGCTTCCCTCTGGACTAAT
GAGTAGTTAACAGTGAGGTAGTGCGCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCACACACACACCCACACACACACCCACACACACACACAC
CCTTACGAGAGGGGTCATCTCCCACCGGACCCAGAATTGAGGTGTGATTT
CATCCTGTTAAATCACCGATAGGGAATTTAAAAGATGTGTTTGGCACTTT
TTTTTTTACAGATCTATTTTATTCTATTTTTATTTTATTTATTTATTTAT
TTATTAATATTTTTTTTTGCCTTGCCTCGACAAAGGCTCTCCCCGTTGTA
CCCCTGCTCGCCTCGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_i17.b1 MSMg01no104_i17.b1 CHROMAT_FILE:
MSMg01no104_i17.b1 PHD_FILE: MSMg01no104_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:50 2005
         (154 letters)



>mm_chr10_19725837_19726390
          Length = 554

 Score =  286 bits (148), Expect = 4e-82
 Identities = 151/152 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacatgctcatattttagacattttatattgaaatacttgataattaacagttctgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacatgctcatattttagacattttatattgaaatacttgataattaacagttctgaag 260

                                                                       
Query: 61  gaaatgattgtctatgcctatgtacgccaggataactgaatacattttgggcatttgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gaaatgattgtctatgcctatgtacgccaggataactgaatacattttgggcatttgaat 320

                                           
Query: 121 tcccaaatattgttagtttcttttccctcctg 152
           ||||||||||||||||||||||||||||||||
Sbjct: 321 tcccaaatattgttagtttcttttccctcctg 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)