BAC Information

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BAC

Clone NameMSMg01-107E01
Chromosome10 (Build37)
Map Location 93,219,002 - 93,299,221
singlet/doubletdoublet
Overlap geneLOC100041907, Usp44
Upstream geneGm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338
Downstream geneMetap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107E01.T7 (MSMg01no107_e01.b1)MSMg01-107E01.TJ (MSMg01no107_e01.g1)
ACCAG321116AG321117
length1,2611,298
length of high quality
(start - end)
376 (90 - 465)277 (133 - 409)
definitionCHROMAT_FILE: MSMg01no107_e01.b1 PHD_FILE: MSMg01no107_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:52 2005CHROMAT_FILE: MSMg01no107_e01.g1 PHD_FILE: MSMg01no107_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,298,901 - 93,299,221)(93,219,002 - 93,219,278)
sequence
NCCCAATTTNTNNNNGGTCAACTCGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTATGTAGACCAGGCTCTTTTTAAATCCATAGAGAG
CCAATTGCCTCCGACTCTCACCCGTTGGGACTAAAGGTATGTTCCACCAG
GAGCCTACAATTTTTTTTAAAGATTTATTTTATTTATATGTAAGTACACT
GTAGCTGTCTTCAGACACCCCAGAAGTGGGTGTCAGATCCCATTACAGAT
GGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACTCAGGATCTCTGGA
AGAGCAGATAGTACTCTTAACTGTTGAGCCATCTCCCCAGACCCCTAGTT
TTTTTTTTTTTTAAAGACAGAATTTCACTTGTAGCTCAGATACAATTTCT
TTTTTTCAAGACTGAATTTCACTGGTGGCTCAGGTGACTTTTAAAGTCAT
GATGTGCCTGCCTCAACTATGCTCACGCTAGAATTACAAGCATGCCCAGA
AAAGCCGCACTAGATCCCCGCCCTTGATTTAAGAGATTCTCTAAAACATG
GATTATTGACTATTATTGTATGTTAATTCTGATTATCTCTTTAAACGTTT
TTTTTTAAAGATTCATTTATAATTATAAATAAGTACTCTGTTGCTGTCTT
CAGACACACCAGAAGAGGACACCAGAAGAGGGCACCAGATCTCATTACAG
GCGGTTGTGAGCCACCATGTATGTGGTTGCTAGGATTTGAACTCATGACC
TTCAGAAGAACAGTCAGTGCTCTTACCCGCTGAGCCATCTTCACCGCCCT
CTCCAAAATTTTCTTAATTATAAAAAAAGCCCAATCACTCTAACATTATC
TTAAAAGCCAACATAACTATATTTTAAAAAAAAGTAATCTAGCATTGTGT
TCACCTTGCCCTTTAACCCCAGCCACTAACTAAGTCAAAATTAGGGTGGA
TCCTCTAAATTTGAAAACCACCCTGGGTAAAAATTTCAGGAATAAGCCCG
GTCCTACCTCATAATATTCCCTGTGTCTCCCTCTAAAAAAAACCCTTAAT
TCTTTTGTTTGAGTGCTTTATATTTATATTCAATCCATTTCTTAAATTCT
TGCTTTTCTTTATTCCATATATGTCTTTCTACTATCTTTCTCTATTCTTT
TTCCGTCTGTGCATCCCTCCTGTATCACCTTCTCTCTTCCTTTCCACTTA
ACAGTTTCTGCTCTCATTATTTTTGGCTTATATAATCTATATTCTCTACT
TCACTGGTACA
CCGGTTTTTTTNNCGCCCATGCGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTAGGTTCGGAGAAGTAA
CAGTGTAACAATGGCCATCCCTTAAAAGGACCCCTAGGCAGTCTTTCAAG
CCACTGGAGAGTCGCAGCACATTCCAGTTAACAAAGAATTCAGGTCCCTC
CACTCAACGTCAAAACTCTAGCACTGTCCGCACGTTGAATAGACCAAAGC
CCAGTAATTAACTCTGCCACCCTCCCCCTGCCTTATTGATTGTGCACTGC
AAGCTGATTCTACAGGGAGGTCAACCTGGGATTAAGTGAATTACCCTCAG
GCTTTGGGCAAAAACAGAGGACGGTGGTTTATATTCTCTGCCACAGAGTC
TTGAGCCGACTCCTGTGAGCTGGGGAGTTTGCACAGAATTGTCCGCCCAC
TGGGCTCCGACAGTTTTTCCCTCACCCCCCGGGGCTGGCCCACAGGGAAG
TCTTCACGCTGTTGGGATTCAGCCCAGCGTTCTCCCATCTTGTTCTAGGT
CCTAACATATTTTTCAAACAACCTCTTGTGAATCTTCCCTCAGACACCTC
TGGTCTACTTTGGAGTCTTTTTAAAAGGCTCCCCTCTTGTTTACCCCATA
GTTCTTCTCTTCCTCTTCCCTCCTTTATAGGAAGGCACAGTGATACGAAT
CGACTTGAATGTAAGACTCTCCCCACCTCCTTTTTACTCTTTTTTACCTA
TGTCCAAGGATGATACGTGCCCTACCTTGCCTTCTACTTCCGCTTCCATA
TTTAGGGTATTCTTAGCGTCAATAACATCTGCTTTCTTGTCTACTATGAT
CACTCCTGGTTTAATGACATCCTTCCCTTCCGTCTTAACTCATTATTTTC
TCTTCTAACCATATATCTCTTCTCCTCTTCAGGACACTTTTACTCTTTCT
TTTTTTTGTCCTTTTCTCTCTCCGTTTTGTTCCAAATTGTCTTTTTCGTT
ACTTTTCCCTTTTTGTTATTGAAACTTATTTTGTCTCTTTCCTCTCCCCT
TTTTTCACTCATTTTCTCCTTAATGTTCTTATTTATTGGCTCCGCTGCAT
CTTCTTCCCCTCGTTAATGCTCTTCTCTTATACTATTTCTCCTATAGCTC
AGTCTCCTTTAATTTGCTCTTCTAAACCACATTCTATTATTCAACCTTCT
ACTTTACCATCCTCTCCATACTTCTCTTCTCCTGTCATCTTTGTACACCT
ACTTCCTATCGGACCTATGCTTACATACCTACTCTCTCTTTCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_e01.b1 MSMg01no107_e01.b1 CHROMAT_FILE:
MSMg01no107_e01.b1 PHD_FILE: MSMg01no107_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:52 2005
         (376 letters)



>mm_chr10_93298446_93299221
          Length = 776

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 56  caccaggagcctacaattttttttaaagatttattttatttatatgtaagtacactgtag 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 caccaggagcctacaattttttttaaagatttattttatttatatgtaagtacactgtag 717

                                                                       
Query: 116 ctgtcttcagacaccccagaagtgggtgtcagatcccattacagatggttgtgagctacc 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ctgtcttcagacaccccagaagtgggtgtcagatcccattacagatggttgtgagctacc 657

                                                                       
Query: 176 atgtggttgctgggaattgaactcaggatctctggaagagcagatagtactcttaactgt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgtggttgctgggaattgaactcaggatctctggaagagcagatagtactcttaactgt 597

                                                                       
Query: 236 tgagccatctccccagacccctagttttttttttttttaaagacagaatttcacttgtag 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgagccatctccccagacccctagttttttttttttttaaagacagaatttcacttgtag 537

                                                                       
Query: 296 ctcagatacaatttctttttttcaagactgaatttcactggtggctcaggtgacttttaa 355
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 536 ctcagatacaatttctttttttcaagacagaatttcactggtggctcaggtgacttttaa 477

                                
Query: 356 agtcatgatgtgcctgcctca 376
           |||||||||||||||||||||
Sbjct: 476 agtcatgatgtgcctgcctca 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no107_e01.g1 MSMg01no107_e01.g1 CHROMAT_FILE:
MSMg01no107_e01.g1 PHD_FILE: MSMg01no107_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:52 2005
         (277 letters)



>mm_chr10_93218802_93219478
          Length = 677

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaggcagtctttcaagccactggagagtcgcagcacattccagttaacaaagaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaggcagtctttcaagccactggagagtcgcagcacattccagttaacaaagaattca 260

                                                                       
Query: 61  ggtccctccactcaacgtcaaaactctagcactgtccgcacgttgaatagaccaaagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtccctccactcaacgtcaaaactctagcactgtccgcacgttgaatagaccaaagccc 320

                                                                       
Query: 121 agtaattaactctgccaccctccccctgccttattgattgtgcactgcaagctgattcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaattaactctgccaccctccccctgccttattgattgtgcactgcaagctgattcta 380

                                                                       
Query: 181 cagggaggtcaacctgggattaagtgaattaccctcaggctttgggcaaaaacagaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggaggtcaacctgggattaagtgaattaccctcaggctttgggcaaaaacagaggac 440

                                                
Query: 241 ggtggtttatattctctgccacagagtcttgagccga 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtggtttatattctctgccacagagtcttgagccga 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)