BAC Information

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BAC

Clone NameMSMg01-108C23
Chromosome10 (Build37)
Map Location 27,312,934 - 27,426,943
singlet/doubletdoublet
Overlap geneLama2
Upstream geneLOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk, E430004N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108C23.T7 (MSMg01no108_c23.b1)MSMg01-108C23.TJ (MSMg01no108_c23.g1)
ACCAG321701AG321702
length713708
length of high quality
(start - end)		654 (43 - 696)586 (74 - 659)
definitionCHROMAT_FILE: MSMg01no108_c23.b1 PHD_FILE: MSMg01no108_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:57 2005CHROMAT_FILE: MSMg01no108_c23.g1 PHD_FILE: MSMg01no108_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,426,295 - 27,426,943)(27,312,934 - 27,313,516)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCTTTGTTTATCTCTGTACCCCATTTTTTAATAGGGTTATTTGATTTTC
TGGAATCCAATTTCTTGAGTTCTTTATATAAAAAATTCAATATCTTAAAT
AAACACGAAGTAATTAAGACTTCTTTACTGAGGTCATTTTGGGAAAGGTA
GTTTTAAAATTAATTTTGCTCTTCATTTAAGGCATTAAACTTAATGGCAT
TTGTTTTCAAATATCTGGCCAGTATCATAGTGAGTTCCAGGTTCCGTGAA
AATCTGTTTCAAAGGAATATATATGAAATGATAGACGAAGGTATCTAAAG
GTCTCTGGTCTCTGCATGGGCATATTTACATGCTAGCACATATGTACACA
CATGCATATATCCCACTGACATACACAGAAAATACTAAAATTAAAAACAG
AAGTTATTTTTCTGAACTCAGATTTGTTTTTCTCTATTGCATTTTAAAAG
TAACCCTTTTCAAGTGTCTTCATTACTACTTCTATTTTAATTACTGTGTA
CTTAATTGTTTTATCATTTTGGTAGCTTTTAAAAGTATATTCAAATATTG
TTTTAAAAGTTTATTCTTTTTTATTGTCTGCATTGAAAATGATATTTTCA
GTTAATTAATACTTAGCTGTATCATGTAAATTTTGACACATTGGATTTTA
ATTACTATTTGGT

CAATATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTATTGTTGAGTAAAATATTTGAAA
TTCCTTTTATAATGAAACAGAATGGAAGGTTTCATGACGTCAAAGGAATG
TAGTGCACAAAATACAATTCCAATGAATGGTTTACAAAAAGAATTCAGTG
AAATAATTTCACTGTGAGACTCTGGTATTGTTCAAATACACATGCTAGAT
TTGAACATCAGTAATTTACAGAGTGAATTATAATAAATTCAACATCCTAG
TGCAGAAAACCATACACAAACCTATTATGAAAGGACAAAATATGTTGATA
AGAAATAAGGAAGTATAGATTCTAAGTTGTTTCTAACTATTTATGAATGG
ACTATAAAAATAAATCATAGATGTGGATAAGGGACAGTTATCTTAATCAC
ATGGTAAATGGATATATGTTTCATTTGAGAGTATGAGAAATCAATATATC
TTACTACATTCTTTAAAACATGTATTTTAAGTTTGTTATAGGTATATTCT
AAATAAATCCAAATACTATCATGTATAAATATTGTTATGATGATACAATT
TTCATGTTAAATTTCTCAGACTTCAAATGTTTCTTTCAGTGCTGAGTGAA
AATGTGCAATTTATGTAGAAGCTGAATCCATTTTAAGATGTAAAATATAT
GGAGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_c23.b1 MSMg01no108_c23.b1 CHROMAT_FILE:
MSMg01no108_c23.b1 PHD_FILE: MSMg01no108_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:57 2005
         (654 letters)



>mm_chr10_27426007_27427060
          Length = 1054

 Score = 1239 bits (641), Expect = 0.0
 Identities = 647/649 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctttgtttatctctgtaccccattttttaatagggttatttgattttctggaatc 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gaattctttgtttagctctgtaccccattttttaatagggttatttgattttctggaatc 878

                                                                       
Query: 66  caatttcttgagttctttatataaaaaattcaatatcttaaataaacacgaagtaattaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 caatttcttgagttctttatataaaaaattcaatatcttaaataaacacgaagtaattaa 818

                                                                       
Query: 126 gacttctttactgaggtcattttgggaaaggtagttttaaaattaattttgctcttcatt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gacttctttactgaggtcattttgggaaaggtagttttaaaattaattttgctcttcatt 758

                                                                       
Query: 186 taaggcattaaacttaatggcatttgttttcaaatatctggccagtatcatagtgagttc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 taaggcattaaacttaatggcatttgttttcaaatatctggccagtatcatagtgagttc 698

                                                                       
Query: 246 caggttccgtgaaaatctgtttcaaaggaatatatatgaaatgatagacgaaggtatcta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caggttccgtgaaaatctgtttcaaaggaatatatatgaaatgatagacgaaggtatcta 638

                                                                       
Query: 306 aaggtctctggtctctgcatgggcatatttacatgctagcacatatgtacacacatgcat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaggtctctggtctctgcatgggcatatttacatgctagcacatatgtacacacatgcat 578

                                                                       
Query: 366 atatcccactgacatacacagaaaatactaaaattaaaaacagaagttatttttctgaac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atatcccactgacatacacagaaaatactaaaattaaaaacagaagttatttttctgaac 518

                                                                       
Query: 426 tcagatttgtttttctctattgcattttaaaagtaacccttttcaagtgtcttcattact 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcagatttgtttttctctattgcattttaaaagtaacccttttcaagtgtcttcattact 458

                                                                       
Query: 486 acttctattttaattactgtgtacttaattgttttatcattttggtagcttttaaaagta 545
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 457 acttctattttaattactgtgtacttaattgttttatcattttggtagcctttaaaagta 398

                                                                       
Query: 546 tattcaaatattgttttaaaagtttattcttttttattgtctgcattgaaaatgatattt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tattcaaatattgttttaaaagtttattcttttttattgtctgcattgaaaatgatattt 338

                                                            
Query: 606 tcagttaattaatacttagctgtatcatgtaaattttgacacattggat 654
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcagttaattaatacttagctgtatcatgtaaattttgacacattggat 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_c23.g1 MSMg01no108_c23.g1 CHROMAT_FILE:
MSMg01no108_c23.g1 PHD_FILE: MSMg01no108_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:57 2005
         (586 letters)



>mm_chr10_27312734_27313719
          Length = 986

 Score = 1058 bits (547), Expect = 0.0
 Identities = 574/583 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttattgttgagtaaaatatttgaaattccttttataatgaaacagaatggaaggtttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tcttattgttgagtaaaatatttgaaattccttttataatgaaacagaatggaaggcttc 260

                                                                       
Query: 61  atgacgtcaaaggaatgtagtgcacaaaatacaattccaatgaatggtttacaaaaagaa 120
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 261 atgacgtcaaaggaatgtagtgcacagaatacaattccaatgagtggtttacaaaaagaa 320

                                                                       
Query: 121 ttcagtgaaataatttcactgtgagactctggtattgttcaaatacacatgctagatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttcagtgaaataatttcactgtgagactctggtattgttcaaatacacatgctagttttg 380

                                                                       
Query: 181 aacatcagtaatttacagagtgaattataataaattcaacatcctagtgcagaaaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatcagtaatttacagagtgaattataataaattcaacatcctagtgcagaaaaccat 440

                                                                       
Query: 241 acacaaacctattatgaaaggacaaaatatgttgataagaaataaggaagtatagattct 300
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 acacaaacctattatgaaatgacaaaatgtgttgataagaaataaggaagtatagattct 500

                                                                       
Query: 301 aagttgtttctaactatttatgaatggactataaaaataaatcatagatgtggataaggg 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 aagttgtttctaactatttatgaatggactgtaaaaataaatcatagatgtggataaggg 560

                                                                       
Query: 361 acagttatcttaatcacatggtaaatggatatatgtttcatttgagagtatgagaaatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagttatcttaatcacatggtaaatggatatatgtttcatttgagagtatgagaaatca 620

                                                                       
Query: 421 atatatcttactacattctttaaaacatgtattttaagtttgttataggtatattctaaa 480
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 621 atatatcttactacattctttaaaacgtgtattttaagtttgttatagttatattctaaa 680

                                                                       
Query: 481 taaatccaaatactatcatgtataaatattgttatgatgatacaattttcatgttaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatccaaatactatcatgtataaatattgttatgatgatacaattttcatgttaaatt 740

                                                      
Query: 541 tctcagacttcaaatgtttctttcagtgctgagtgaaaatgtg 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctcagacttcaaatgtttctttcagtgctgagtgaaaatgtg 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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