BAC Information

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BAC

Clone NameMSMg01-109E01
Chromosome10 (Build37)
Map Location 106,107,605 - 106,107,834
singlet/doubletsinglet
Overlap genePpfia2
Upstream geneBC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109E01.T7 (MSMg01no109_e01.b1)MSMg01-109E01.TJ (MSMg01no109_e01.g1)
ACCAG322485AG322486
length743749
length of high quality
(start - end)
231 (79 - 309)152 (101 - 252)
definitionCHROMAT_FILE: MSMg01no109_e01.b1 PHD_FILE: MSMg01no109_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:24 2005CHROMAT_FILE: MSMg01no109_e01.g1 PHD_FILE: MSMg01no109_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATANAATATCTATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAG
ACCGCGGAATTCACTAATGTTACTATGAAATATATCACGGAACCTCTGCA
TTAACCACTCAAATGTGGAAAAAAAAATCTTCCAGAAATTTCAATTGCAA
TTATCATTTAGTTACTTGTGTTTTGTTTACCTTATTTCCTCTTTTTTTAA
ACAGTGATCTTATGTAAAATTATAATTTATATGAAAATATGTTTACCTAA
GGGAGAACAGCTAAGGATTTTTCCTTACAACTCCTCAGTCTTCTATGTGT
TCTAAGTGCTGCTTTAGGATCCAAATTCCATTTTATGCAAAGTACTCATA
AAACTTATAACTTCTCAAATATGGTTTTCCATGTGTCCACTTCTTTGCCT
TGTTAAAAAATTGATATTGTGTATTAAAATTATTTATGTATCTATTCTTA
TTTTTTTACTATACTTATTGCTTTCTTTCCCGCCCATACTGCTATATCTT
GATCATTTTATCTACTCTCTTATTTTCATAGCTACTTGCATACTAATTAA
ATTCCCATTAAATCAATAACAATTACCTCTCACGCCTTTTTTTTTCTACT
TTCTACTATCCACCCTCTCTTCACTTTCTGATTGTCTTCGTGTTATTTTC
TCTCCATGTCCACATTTCCGCTCCCCCAAAAACCTTTCATCAAATCTCGT
TCTCCTTTCTCTCCATTCCCCTAATGCCCCTCCCCCTCTCCAG
TAATANAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTCAATACAGTACA
CAATCAGGGGTGGGCCTATGAGTAGAAAGAAAAGAATGGAGAGAGAGAAA
GGGAGGAAGAGATAGGGGAGAGAGGAAACGAAGGGAGATAAGAAGAAGGA
AGAAATGACAAAGGGAATAAATGACAAAGCAAGGAAGGAATGGAGGGAAG
AAGAAAAACAGCGGACGGAAGGATGGATAGATTGGAGAAATGAAGGGGAG
AAAAGAAATATGGGAAGGACTAAGAGCAAGAAATTGATAAATTTTGTCCC
CTACACGCTAAGTTCACGTCCTGTGTCTAGAGAACACCACCTGGCGGAGG
AGGAGATGATTTTCAGACAGAGAAAGATCCTATCCAAGCATCAACAGGAA
GGTCTGGCAAGATCCCAGCAGCCCCGCTTGTTCCCCTAATATACTCCCTT
ACCTGCCTGATGTTTGCTCCTACCCTCCTCTACTTTATCCAGCACTTTGC
CTAAACTGCCCCTGTCTCCCCCCTCCCCCGTGCATATTTTGTTCCTACTA
ACCCTCTCCGATAACAGAAAATAGCCCCCTTTTAACACTCTAACTGTCCA
GGTTTCTCCCTGGACCATTGGCTTTCCCCGATGTATTCTGCTCCTGGAAG
CCCCGATCTACACAATTTGTTTTTACATAGCCTCTGGGCCTTCTCACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_e01.b1 MSMg01no109_e01.b1 CHROMAT_FILE:
MSMg01no109_e01.b1 PHD_FILE: MSMg01no109_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:24 2005
         (231 letters)



>mm_chr10_106107405_106108034
          Length = 630

 Score =  377 bits (195), Expect = e-109
 Identities = 222/231 (96%), Gaps = 1/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatatcacggaacctctgcattaaccactcaaatgtggaaaaaaaaatcttccagaaa 60
           |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| 
Sbjct: 201 aatatatcacggaacctctgcattaaccactcaaatgt-gaaaaaataatattccagaac 259

                                                                       
Query: 61  tttcaattgcaattatcatttagttacttgtgttttgtttaccttatttcctcttttttt 120
           || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 260 ttccaattgcaattatcatttagttatttgtgttttgtttaccttatttcctctttttta 319

                                                                       
Query: 121 aaacagtgatcttatgtaaaattataatttatatgaaaatatgtttacctaagggagaac 180
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 aaacagcgatcttatgtaaaattataatttatatgaaaatgtgtttacctaagggagaac 379

                                                              
Query: 181 agctaaggatttttccttacaactcctcagtcttctatgtgttctaagtgc 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agctaaggatttttccttacaactcctcagtcttctatgtgttctaagtgc 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 630
Length adjustment: 9
Effective length of query: 222
Effective length of database: 621
Effective search space:   137862
Effective search space used:   137862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)