BAC Information

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BAC

Clone NameMSMg01-109I19
Chromosome10 (Build37)
Map Location 83,190,661 - 83,349,230
singlet/doubletdoublet
Overlap gene1500009L16Rik
Upstream geneHcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2
Downstream geneLOC100041225, C230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109I19.T7 (MSMg01no109_i19.b1)MSMg01-109I19.TJ (MSMg01no109_i19.g1)
ACCAG322707AG322708
length713714
length of high quality
(start - end)
243 (89 - 331)121 (88 - 208)
definitionCHROMAT_FILE: MSMg01no109_i19.b1 PHD_FILE: MSMg01no109_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:49 2005CHROMAT_FILE: MSMg01no109_i19.g1 PHD_FILE: MSMg01no109_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,348,989 - 83,349,230)(83,190,661 - 83,190,781)
sequence
CTATATCCTTTNNACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CAGAACGGAGCCGCGGAATTCTGATGTTCCCATAAAAGCACATGGGGTTG
GAGTCCTAGGGCAACAAGAATAGATAGGCATGTGTTTCTCATAGGACCTC
AAGACAAACCTTCAAGCACTGGTCACCACTTCCACATCTCACGACTTGTG
AAATCTTGTGACTAGGCCAGGAGAAGGGATGCTATAATCAATTCTGCTTG
ACTTCTATCTGTAAATGCAAAAGACCAGAATGAGGCGGTAAGAGAAGATC
AAGCATTTTCAAAATGGCTGCTAAGGCTGGTTTTGTATGTTAGTTAGCAG
AATGCTTGCCTAGCATGCACAGAGCCCTGGGTTCAATCCCCAGCACTGCA
TAAGCCAACTTGGTGGCATTGACCTTTAACTCCGGCACTAGGGAGGTGGA
GAAAGGAAGAGCAGAAGCCAATTACAAGGCTACTCCAAGCTACATGGAAC
CTTGTCTGAAAGAAACAACACAAAACAGCTGATAGGAAGCCAAATGCTCA
AGTCACTGCCCCTGAAAACATGAAGAAGTCACTGCACTGTGACAGTTTCC
AGCCTGTTTGCTGGCTCCCCTTCAGTCCACAGCCTTGTTTCATTTGCCAC
CCTATGAGATTTTATAGGGTTGATACACCTTCATAATCTTGTGAACCCTT
TTCAAATTATGGG
AGTGGCATNACCACTATGATCTGTGTAGGCCGGGCGGCCGCCTGGTCACA
CCAGGGAGGTGAACTATAGATTTTCAAAGAAAGTCAGAATGTTCCTCGTT
ACTCTCAGGAACAGCTCATTTTACTATTTCCACAGGAGCACTTTCTCCCC
ATAGGAGTTTTGATCTTTCGCAACTGAGAGCTATGGAGGGACGGCTGTTT
GTGGTTTCTGCTTTGCGGTGGTTTTAGCATTTCTCCTGAGAAATGGCTGT
GCAGAGTGCTCTGTTTGGATAGTTATTCCCATACAGGGAGCCTTGGGGGG
CCCTTGTCCTAGCAGCCAGGAACTCTTTTTGTGTGTTAGTCTTCCAGCTT
CTTCCTCAGGAGGTTTTTACTGATCCCCCCCCTCCCTCTGTCCTTTTAAC
ACTCTTGATGAGGGCTATGCACACCGGAACATTCCTTTAGTCTCATGCTT
TTGGACTCTGCACGGTCGTGTGCGTTTCTTCGTTCAGGTTTATCTCTGTG
CTATTGAGGTTATTCTGCACTACCTACCAAGATCTACGCCTCGCTCGCAC
TATTTAGACGAGATCCTGCCTCCCCACACTTGTCTTTTTTTATTTTCTAC
TTTTCGTTTTGTACTTTATTATCTTTTGATGTAATAGTTTGCTTTAGTGG
GCTCTTTCGCTTTATTTCTTCTCCTCGCCCCTCTGTTTTTTTATTTTACA
TCTTCTACCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_i19.b1 MSMg01no109_i19.b1 CHROMAT_FILE:
MSMg01no109_i19.b1 PHD_FILE: MSMg01no109_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:49 2005
         (243 letters)



>mm_chr10_83348789_83349431
          Length = 643

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatggggttggagtcctagggcaacaagaatagataggcatgtgtttctcataggacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 442 cacatggggttggagtcctagggcaacaagaatagataggcatgtgtttctcataggaca 383

                                                                       
Query: 61  tcaagacaaaccttcaagcactggtcaccacttccacatctcacgacttgtgaaatcttg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 382 tcaagacaaaccttcaagcactggtcaccacttccacatttcacgacttgtgaaatcttg 323

                                                                       
Query: 121 tgactaggccaggagaagggatgctataatcaattctgcttgacttctatctgtaaatgc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgattaggccaggagaagggatgctataatcaattctgcttgacttctatctgtaaatgc 263

                                                                       
Query: 181 aaaagaccagaatgaggcggtaagagaagatcaagcattttcaaaatggctgctaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaagaccagaatgaggcggtaagagaagatcaagcattttcaaaatggctgctaaggct 203

             
Query: 241 gg 242
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no109_i19.g1 MSMg01no109_i19.g1 CHROMAT_FILE:
MSMg01no109_i19.g1 PHD_FILE: MSMg01no109_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:49 2005
         (121 letters)



>mm_chr10_83190461_83190981
          Length = 521

 Score =  219 bits (113), Expect = 6e-62
 Identities = 119/121 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgttcctcgttactctcaggaacagctcattttactatttccacaggagcactttctc 60
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttccccgttgctctcaggaacagctcattttactatttccacaggagcactttctc 260

                                                                       
Query: 61  cccataggagttttgatctttcgcaactgagagctatggagggacggctgtttgtggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccataggagttttgatctttcgcaactgagagctatggagggacggctgtttgtggttt 320

            
Query: 121 c 121
           |
Sbjct: 321 c 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)