Query= MSMg01no109_k24.b1 MSMg01no109_k24.b1 CHROMAT_FILE:
MSMg01no109_k24.b1 PHD_FILE: MSMg01no109_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:00 2005
(539 letters)
>mm_chr10_117069215_117070152
Length = 938
Score = 988 bits (511), Expect = 0.0
Identities = 529/535 (98%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 5 gaattctcttggtttctcgactctgattatgtgtgttttgttagtcattccccatgttgg 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttggttt-tagactctgattatgtgtgttttgttagtcattccccatgttgg 263
Query: 65 gacgttggaatactttctgattctgttataaatgatgatataaatccatcgatacatatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacgttggaatactttctgattctgttataaatgatgatataaatccatcgatacatatc 323
Query: 125 ttacatacatgcattagtatacatgcatgctttgtctacagaatccaaagagggcatcat 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttacatacatgcattagtgtacatgcatgctttgtctacagaatccaaagagggcatcat 383
Query: 185 atctccctggaactgaggttccaacaatagcagcttccgcatgggtgctgggaacttgat 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 atctccctggaactgaggttccaacaatagcagcttccgcgtgggtgctgggaacttgat 443
Query: 245 gtgggtcctctagagaagcagccagtgctcttaactagtgagctgtctttccagccctga 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 gtgggtcctctagagaagcagccagtgctcttaaccagtgagctgtctttccagccctga 503
Query: 305 acttttacttaaaaaaaaaattgaaacctacacatttgagcacaaatttacttttaacct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acttttacttaaaaaaaaaattgaaacctacacatttgagcacaaatttacttttaacct 563
Query: 365 agatttagacatagtagatgagccatatttgactctaggttttgaaggcatccttaaaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agatttagacatagtagatgagccatatttgactctaggttttgaaggcatccttaaaac 623
Query: 425 ttgttgacatggtgtagaaaaatcttaggtgaaaaacgagaaaagcagtaccaagtggac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgttgacatggtgtagaaaaatcttaggtgaaaaacgagaaaagcagtaccaagtggac 683
Query: 485 cagggcaaaatattcactgtcagtggtgtgtgtgtatgtgtgtgtgtgtgtgtgt 539
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagggcacaatattcactgtcagtggtgtgtgtgtatgtgtgtgtgtgtgtgtgt 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_k24.g1 MSMg01no109_k24.g1 CHROMAT_FILE:
MSMg01no109_k24.g1 PHD_FILE: MSMg01no109_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:00 2005
(252 letters)
>mm_chr10_117165882_117166533
Length = 652
Score = 429 bits (222), Expect = e-125
Identities = 243/250 (97%)
Strand = Plus / Minus
Query: 1 ataaggaacagcatgaggcagacatcctgtgcttgaacttagtactcctctcagggacgg 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 450 ataaggaacagcatgaggcagacatccagtgcttgaacttagtactcctctcagggacag 391
Query: 61 caagcctgagactcatcaccagtagtgcgatggggctctggaatgctggggccccagcag 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 390 caagcctgagactcatcaccagtagttcgatggggctctggaatgctggggccccagcag 331
Query: 121 ctccggtcctggaactttgcaaaggagcaagggactggagaaaggccagacacacataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctccggtcctggaactttgcaaaggagcaagggactggagaaaggccagacacacataca 271
Query: 181 gtaaagccagagtcaggtgggagttttctaaacctgtgcaacccagaacccgcatgttta 240
||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct: 270 gtaaagccagagtcaggtgggagttctctaaacctgtgcaacccagaacctgtgtgttta 211
Query: 241 ttacatatgg 250
||||||||||
Sbjct: 210 ttacatatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
