Query= MSMg01no109_o22.b1 MSMg01no109_o22.b1 CHROMAT_FILE:
MSMg01no109_o22.b1 PHD_FILE: MSMg01no109_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:19 2005
(368 letters)
>mm_chr10_65011147_65011915
Length = 769
Score = 652 bits (337), Expect = 0.0
Identities = 354/363 (97%), Gaps = 7/363 (1%)
Strand = Plus / Plus
Query: 5 gaattctactgcctgaca-ataactctgtccatcttctaagtgcaatattatatccagta 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactgcctgaaatataactctgtccatcttctaagtgcaatattatatccagta 264
Query: 64 gtgtgctaagctaaaagggggatttgtataaaaacagttaagactggttctcaaatggag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgtgctaagctaaaagggggatttgtataaaaacagttaagactggttctcaaatggag 324
Query: 124 tgctggaccacccagaattattctgttaaactacaatgtgatcatattgatgataagttg 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctggaccacccggaattattctgttaaactacaatgtgatcatattgatgataagttg 384
Query: 184 tgattttctgtgactgttgagggatatccagtatatttttccatgtttattatttaccat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgattttctgtgactgttgagggatatccagtatatttttccatgtttattatttaccat 444
Query: 244 ctgcatagttcatctattgagatattttgtgaagattttaattcttcttgatttcatgtc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgcatagttcatctattgagatattttgtgaagattttaattcttcttgatttcatgtc 504
Query: 304 atatattgagtgtttatatgtatatgtgtgtgtgtgtgtgtgtataagtgtgtgagtatg 363
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 atatattgagtgtttatatgtatatgtgtgtgtgtgt------ataagtgtgtgagtatg 558
Query: 364 tgt 366
|||
Sbjct: 559 tgt 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 769
Length adjustment: 9
Effective length of query: 359
Effective length of database: 760
Effective search space: 272840
Effective search space used: 272840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_o22.g1 MSMg01no109_o22.g1 CHROMAT_FILE:
MSMg01no109_o22.g1 PHD_FILE: MSMg01no109_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:19 2005
(576 letters)
>mm_chr10_65063526_65064501
Length = 976
Score = 1029 bits (532), Expect = 0.0
Identities = 565/576 (98%)
Strand = Plus / Minus
Query: 1 tagaatctgagagacttgggctgcagtgatctattatcttaaggtgtcaagtaaatagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tagaatctgagagacttgggctgcagtgatctattatcttaaggtgtcaagtaaatagca 717
Query: 61 cttctctaatttcatatttattagctatcaaatggaagacaagactaaatttgttctcag 120
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 716 cctctctaatttcatatttattagctatcaaatgggagacaagactaaatttgttctcag 657
Query: 121 gtgataacatgacgaaaattaggtaaattaggtaaagtagatgcagggctctggactatt 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 656 gtgataacatgacaaaaattaggtaaattaggtaaagtagatgcagggctctggactact 597
Query: 181 ctcagaatcagaactgcatttaaaattatgttacctatttggcatgtggtcggtacaaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 596 ctcagaatcagaactgcatttaaaattatgttacctatttggcatgtggtcggtgcaaaa 537
Query: 241 cacatatgatctctatattttgaaattaagggaactggatcttagtctatatataccaca 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 536 cacatatgatctctatattttgaaattaagggaattggatcttagtctatatataccaca 477
Query: 301 ggcattgactttagtaatattttttttattgaaattgtagtccacctataaaatccagat 360
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 476 ggcattgactttagtaatatttttttaaatgaaattgtagtccacctataaaatccagat 417
Query: 361 gccccatcacaaatattttgtaatggccttgttcttgtactgtagaattagatacactcg 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 416 gccccatcacaaatattttgtaatggccttgttcttgtactgtagaaatagatacactcg 357
Query: 421 taggattatatattcctcatacactatcttgttttaagatagatgaggttttccaaagta 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 taggattagatattcctcatacactatcttgttttaagatagatgaggttttccaaagta 297
Query: 481 atgtgaacactctagcatccatggatagctgccatttagcgtaaaacttaactaaccaca 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 296 atgtgaacactctagcatccatggatagctgccatttagcataaaacttaactaaccaca 237
Query: 541 gtctacacacacagatcctccctttcatttgcatgg 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 gtctacacacacagatcctccctttcatttgcatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
