BAC Information

Click to search

BAC

Clone NameMSMg01-109O24
Chromosome10 (Build37)
Map Location 65,222,954 - 65,223,198
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3, LOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109O24.T7 (MSMg01no109_o24.b1)MSMg01-109O24.TJ (MSMg01no109_o24.g1)
ACCAG322995AG322996
length717728
length of high quality
(start - end)
573 (98 - 670)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no109_o24.b1 PHD_FILE: MSMg01no109_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:20 2005CHROMAT_FILE: MSMg01no109_o24.g1 PHD_FILE: MSMg01no109_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCCCCNNCTCCCCNNTNTTATCTATXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAAACTGTTCTCAAAACAAA
AGAATTTCTCAAAGAATCACTATCCCTGACCTCTAGCTGTACTACCAAGC
GATAGTGATTAAAAAAAAAAAAAAGCACATGGTATTGGTACAGAAACAGA
CAATTTGTTCAGTAGAATAGAATTGAAAATCCAGAAATAAACCCACACAC
CTATGGGCACTTGATCTTTGACAAAGAAGCCAAAACTATTCAGTGAAGAA
AAAAAAAAAGCATCACCAACAAATGGTGCTGGTCTAACTGTCACTCTGCA
TGTAGAAGAATGTAAATTGATCCATTTTTATCTCCCTGTAAAACGCTCAA
GTTCAAGTGGATGAAACACTTCAACATAAAACCACATACACTGAATCTAA
AAGAAGAGAAAGTAGGAAGTTGCCTTGAACACATTGGTGCAGAGGAAAAT
TTCCTGAACAGAACACCAGTGCTTGGGCTCTAAGATCAACAATTGACAAA
TGGGACCTCTTGAAATTGAAAAGCTTCTGTAAGCCAAAACATCAATCTAC
ATATTAGGAAAAGATATTCACTAATACTACATCTTATAGATGACCAATAT
CTAAAATATACTGAGAGCTCAAAAATTAGACACCAAAAATCAAATAACCC
AATTCAAAAATGGGATA
CCCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXTTTCGTAGTAGAGGT
GACCTATAGAAGGTTTCAAGAAAACCAGGGTAAGTTAAACTTCACCTTAT
CATCTTTATAGGTAGTAATGTTTGTTTGGGAAGCAGCTCTATGGGAATCT
GGTGTATATTCATACATAAATCATCAATGTATCATATGCAATATGTATTT
GTGTAAATATTAAATATATCCTAAGTTTCACAAGATATATTTTCCACAAT
AGGAATATAGGAGGTAGAAAGGAATATGCTCATAAATTCTGAGCAAAATT
ATAACACTTCTTGGTCTAAAATATCATCATATTAAAGGGAAGCAGATATA
ATTAAAATTGATTTTCAAATTGTGCCTCCTTAGACAGATAGTAATGATAT
TAGAAGTTATAAGTAAGATAATAGTAACTACATAATAGGAAAAGAAAATT
AGATCAATAGCAGAGATATTTATTCAATGCAATTAAAGGATATACAAATA
TCCTAGAGAAAGTTAAAATATGAGATTATAGTAACAATGATATATAAATA
AGGTTAAGAGTGTTGATACCATACTCACTCAGCTAGAAACTGTGGACCAC
AGCTCTTCTAGTCTGTCTAGAGTTAGTAAATGATAGTTTCCGATAGATAT
TACCAAAATACTAATATATTATTACCAAATGAGTTGACAGACTCTCAGTG
GTGAGCCAGTCCACTCACATATGTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_o24.g1 MSMg01no109_o24.g1 CHROMAT_FILE:
MSMg01no109_o24.g1 PHD_FILE: MSMg01no109_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:20 2005
         (247 letters)



>mm_chr10_65222754_65223400
          Length = 647

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtaagttaaacttcaccttatcatctttataggtagtaatgtttgtttgggaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtaagttaaacttcaccttatcatctttataggtagtaatgtttgtttgggaagcag 260

                                                                       
Query: 61  ctctatgggaatctggtgtatattcatacataaatcatcaatgtatcatatgcaatatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctatgggaatctggtgtatattcatacataaatcatcaatgtatcatatgcaatatgt 320

                                                                       
Query: 121 atttgtgtaaatattaaatatatcctaagtttcacaagatatattttccacaataggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 atttgtgtaaatattaaatatatcctaagtttcacaagatatattttccacaataggaag 380

                                                                       
Query: 181 ataggaggtagaaaggaatatgctcataaattctgagcaaaattataacacttcttggtc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggaggtagaaaggaatatgctcataaattctgagcaaaattataacacttcttggtc 440

                
Query: 241 taaaa 245
           |||||
Sbjct: 441 taaaa 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)