Query= MSMg01no110_b07.b1 MSMg01no110_b07.b1 CHROMAT_FILE:
MSMg01no110_b07.b1 PHD_FILE: MSMg01no110_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:32 2005
(599 letters)
>mm_chr10_101671223_101672219
Length = 997
Score = 783 bits (405), Expect = 0.0
Identities = 498/529 (94%), Gaps = 5/529 (0%)
Strand = Plus / Minus
Query: 72 taaaaggagaatctgtaagtacc-ccgttactaaaccaacccaacccctaaaagcaagtt 130
||||||| |||||||||| |||| || |||||||||||||||||||||||||||| ||||
Sbjct: 997 taaaaggcgaatctgtaactaccacc-ttactaaaccaacccaacccctaaaagcgagtt 939
Query: 131 ataagtgtttatattcttttatacacaggtaagtataatcttcatccccatcaaaagttc 190
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 ataagtgtttatatccttttatacacaggtaagtataatcttcatccccatcaaaagttc 879
Query: 191 tctttgcaacagaccggaaatcactaagcaaaaccacaaccaatcaaaatgagttgtgat 250
||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 878 tctttgcaacaga-cagaaaccactaagcaaaaccacaaccaatcaaaatgagttgtcat 820
Query: 251 ttgagtaccaacagatgctttgattttgtgattcatttcttcttaaaagtcagtggatcg 310
|||| |||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |
Sbjct: 819 ttgaataccaacagatgctttaatttt-tgattcatttcttcttaaaagtcagtagatgg 761
Query: 311 tagaagaatggcatcctctccctcaaaggccagctggcaactcttttagtggcatgtcca 370
|||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| ||
Sbjct: 760 tagaagaatggcatcccctccatcaaaggccagctggcaactcttttagtcgcatgttca 701
Query: 371 atattcagagctagcatctggtaaagaacactaatttatatcaagaaaagatagactgaa 430
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 700 atagtcagagctagcatctggtaaagaacactaatttatataaagaaaagatatactgaa 641
Query: 431 aataaaccatattcatttcaccttagtttccttctctctcaacaaagctagataactcat 490
||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 640 aataaaccatattcacttcacctcagtttccttctctctcaacaaggctagataactcat 581
Query: 491 aataaccattgtcagttaacatctcatggtcctgataactactaataaggaaaatgaatt 550
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct: 580 aataaccattgtcagttaacatatcatggtcctgataactattaataaggaaaatgattt 521
Query: 551 tgtttagaaatattaacatgagtgttatgaattgaattttttataccag 599
| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 520 t-tttagaaatattaacaaaagtgttatgaattgaattttttataccag 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 997
Length adjustment: 10
Effective length of query: 589
Effective length of database: 987
Effective search space: 581343
Effective search space used: 581343
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_b07.g1 MSMg01no110_b07.g1 CHROMAT_FILE:
MSMg01no110_b07.g1 PHD_FILE: MSMg01no110_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:32 2005
(550 letters)
>mm_chr10_101578188_101579133
Length = 946
Score = 938 bits (485), Expect = 0.0
Identities = 526/543 (96%), Gaps = 7/543 (1%)
Strand = Plus / Plus
Query: 1 actgattatttttagtaccaatttcggtttttttttcttaatttttcttaattttgattt 60
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 actgattatttttaataccaatttc---atttttttcttaatttttcttaattttgattt 260
Query: 61 taataatatgtatcttaatatgaagacataaaatttgggtatattaaagagacagtatat 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 taataatatgtatcttaatatgaagacataaaatttgggtatattaatgagacagtatat 320
Query: 121 gattttttaaaataattttattgtttctttgaattgatgtattttttttaaaagccaatg 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gattttttaaaataattttattgtttctttgaattgatgtattttt----aaagccaatg 376
Query: 181 tggttattattttaatagcttcctaagtccaagcaatgttgtgggaaataaggaagcaca 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 377 tggttattattttaatagcttcctaagtctaagcaatgttgtgggaaataaggaagcaca 436
Query: 241 ggcctgtgtagtttgtaaactaagaagaacaaaatataaattataattgacgtttgattg 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 437 ggcctgtgtagtttgtaaactaagaagaacaaaatataaattataattgatgtttgattg 496
Query: 301 agaagtagcatgcatgaatggacaatacgtctttcaaaagacatggattatttaaataaa 360
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 497 agaagtagcatgcatgaatggacaatacatctttcaaaagacatggattatttaaagaaa 556
Query: 361 atacaaatgctagtacacacagcatattctttgatgaaatattggtaaaagaggactcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atacaaatgctagtacacacagcatattctttgatgaaatattggtaaaagaggactcag 616
Query: 421 aggtactcaaatcaacatagattatttccatttttcttggttgcccattgtaactagatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aggtactcaaatcaacatagattatttccatttttcttggttgcccattgtaactagatg 676
Query: 481 ataaaacacctactgctaaatattctgcctatgtaggttcccaatgtttttgtctttgtt 540
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 677 ataaaacgcctactgctaaatattctgcctatgtaggttcctaatgtttttgtttttgtt 736
Query: 541 ttt 543
|||
Sbjct: 737 ttt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 946
Length adjustment: 10
Effective length of query: 540
Effective length of database: 936
Effective search space: 505440
Effective search space used: 505440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
