Query= MSMg01no110_m13.b1 MSMg01no110_m13.b1 CHROMAT_FILE:
MSMg01no110_m13.b1 PHD_FILE: MSMg01no110_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:29 2005
(629 letters)
>mm_chr10_116725729_116726756
Length = 1028
Score = 1178 bits (609), Expect = 0.0
Identities = 624/629 (99%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 1 tggggtcacatggaaggagcccagctgctttaagaccaaagactacagcatgttgttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tggggtcacatggaaggagcccagctgctttaagaccaaagactacagcatgttgttttc 769
Query: 61 aagcacagaatatcgctaccataatgttattccctttttagggtgagaattcaggtcagt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aagcacagaatattgctaccataatgttattccctttttagggtgagaattcaggtcagt 709
Query: 121 gtttgttactgcagacatggttttaagagcaaatcaatagactgtctccagttatcacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gtttgttactgcagacatggttttaagagcaaatcaatagactgtctccagttatcacaa 649
Query: 181 atgcaaggacactagagaaataattcgttgaactcgctgcttactgccacagagaacgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atgcaaggacactagagaaataattcgttgaactcgctgcttactgccacagagaacgct 589
Query: 241 ggctggatctgacctgaagtggttctataactgtccttgtcactcctcacccttgtcttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 588 ggctggatctgacctgaagtggttctataactgtccttgtcactcctcacccctgtcttt 529
Query: 301 cagctctgctgcaggatgacatcactgcagccatacaatgtgcaaagagggtggtgagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagctctgctgcaggatgacatcactgcagccatacaatgtgcaaagagggtggtgagag 469
Query: 361 atccccaaggcattcgagcatggtaggttaaaacattggaaggggaacggctggctctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atccccaaggcattcgagcatggtaggttaaaacattggaaggggaacggctggctctgt 409
Query: 421 tgatataagcagtgtggctaaggcctaagtgtcattctgagaagggcaggtgcagctggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 408 tgatataagcagtgtggctaaggcctaagtgtcattctgagaagggcaggtgcagct-ga 350
Query: 481 ggcttaacctacagcatcatctttagggaatttctccagcttgtgagagtcccccatata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggcttaacctacagcatcatctttagggaatttctccagcttgtgagagtcccccatata 290
Query: 541 cctacttccttctcaggcctgcaggctagctgtagaatcagtgtactgtacattcatagg 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 289 cctacttccttctcaggcctgcaggctagctgtagaatcagtggactgtacattcatagg 230
Query: 601 ataaggcattgctcttgagcatcctgtgc 629
|||||||||||||||||||||||||||||
Sbjct: 229 ataaggcattgctcttgagcatcctgtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space: 630142
Effective search space used: 630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_m13.g1 MSMg01no110_m13.g1 CHROMAT_FILE:
MSMg01no110_m13.g1 PHD_FILE: MSMg01no110_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:29 2005
(590 letters)
>mm_chr10_116554519_116555510
Length = 992
Score = 1125 bits (582), Expect = 0.0
Identities = 589/592 (99%), Gaps = 2/592 (0%)
Strand = Plus / Plus
Query: 1 cttgtcataaatgaaaagcattcattagtttgtcatctatgagccacagtatctttgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtcataaatgaaaagcattcattagtttgtcatctatgagccacagtatctttgccc 260
Query: 61 tcactgtcttctgataccccagagtcaaggtcaaagattcctacattctttcttacctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactgtcttctgataccccagagtcaaggtcaaagattcctacattctttcttacctga 320
Query: 121 aacatgtctgagtgacagccaagtcctccctggaatgtccagaagaacgtactactgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatgtctgagtgacagccaagtcctccctggaatgtccagaagaacgtactactgatt 380
Query: 181 taactccatttactgaatatacagaagggtcctaccaagggctatggctatactgtg--c 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 taactccatttactgaatatacagaagggtcctaccaagggctatggctatactgtgtgc 440
Query: 239 tgtatgcatgtgtacaaatatatgttagttcacgcaccgtgcacacacatggtgaggaca 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tgtatgcatgtgtacaaatatatgttagttcacgcactgtgcacacacatggtgaggaca 500
Query: 299 gaggctggtgtgcagtatcttcctttatcactttccaccgcacttacttattatttgtgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggctggtgtgcagtatcttcctttatcactttccaccgcacttacttattatttgtgt 560
Query: 359 agttacatgtgtgtgcatatgcacatgtatgcactacagcatatgtatggcagttaggtg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttacatgtgtgtgcatatgcacatgtatgcactacagcatatgtatggcagttaggtg 620
Query: 419 actctcctaagtcactcgtggatacagactcgtgactaggttgcctctttcctccatggg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actctcctaagtcactcgtggatacagactcgtgactaggttgcctctttcctccatggg 680
Query: 479 ttccaggaaccaaactcaagtcgtcctgcttcgggagcctccctttcagctgctcagcca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccaggaaccaaactcaagtcgtcctgcttcgggagcctccctttcagctgctcagcca 740
Query: 539 ccagcagcctaagaactcactgtctctcgtctctccaggactaggattccag 590
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagcagcctaagaactcactgtctctcgtctctccaggactaggattccag 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 992
Length adjustment: 10
Effective length of query: 580
Effective length of database: 982
Effective search space: 569560
Effective search space used: 569560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
