BAC Information

Click to search

BAC

Clone NameMSMg01-112E18
Chromosome10 (Build37)
Map Location 103,987,974 - 104,146,076
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112E18.T7 (MSMg01no112_e18.b1)MSMg01-112E18.TJ (MSMg01no112_e18.g1)
ACCAG324744AG324745
length741734
length of high quality
(start - end)
429 (70 - 498)422 (74 - 495)
definitionCHROMAT_FILE: MSMg01no112_e18.b1 PHD_FILE: MSMg01no112_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:25 2005CHROMAT_FILE: MSMg01no112_e18.g1 PHD_FILE: MSMg01no112_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,145,648 - 104,146,076)(103,987,974 - 103,988,395)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGAGCGCGGA
ATTCTGCTACCATTACTTACCTGCTATTAATGCAAATTTTATACATCCAG
GAGAGATCAGAGGTTTTTTTTAATTGATTAAGATTCCAAAACAGTATAAC
AGATAAGCCTGACAAGAGGGAAAACAGAGCAACCTCGTGGACCTTGTACT
TGGATAGAAACAGAGACTCCATTTTTCATTATGAAGGTATATAATTCTGA
TCCTTGGGACTTCATTACTGAGAACGGAATTTTAGTTTCCAACATTAAAG
GTACCCTACTTAAAGCTGAATAAAATCAAAGTTCATAAATTCTGAGAACA
CACAGTTTTAACAGCCTAATGACAATCTAGATTTGGAGGAAGTAGGTTTA
TGGAGTGATTTTTGACTAGTAAGTGTTAGGATTCTTTAAAACCACCATAG
ATTTGAGAAACAGTCAATATGATAGATAATTATTAAATCTCTGGGACATT
AGAAAGGCTTCCAATGAACAATACAACAAATTCAGAATCCATTTGCAAGT
AACTTCTCAGTTTCTCTGTATATGGAACTACAACCAACTATTAATCACAG
TATACCGCAAAATGTATAACTGACGCGGATATTATAGTAGAAAGACAAAT
ACACCTTATTTCTTTCCAATAGAATTGACAAAATGTTTGCAATGTGGAGA
CACCAGTACTCAATTCTGTTTATTAGACCAGACCTGCCGAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCTCTGGGAACCCTGAAGCATCAAG
GTTAATTGATTCTGTTGGGCTTCTTGTTGAGTTCCTATCCCTATCCCTTC
CAGGTTCCTCAATCCTTTCCCTACATGTTGATAAATACCTTAGAGAATAA
CTGAAAATAGGATATTTTACTTTGGGTCAAGATCACCAGACATATAAGTA
GATAATTGGCTGATTACCATGCTATGGGCCTGATGCAAAGCTATACATCA
CGATACAGAACACACAGTACGTGAAAGCATACCACATTAAGGAAGACAGG
AAACCGAGAGTGGATACAAGACAGGGCCAGGCTAACAGATATCCCTTCAA
AGGCCTAATCCCAGTGACCTCCTTTTTTCATGTAGTCTGGGTCCCCAAGC
ATTTAAACTCTTTCCAAAGCATAATATTTGCATATGTCAATATATCACTG
AATTCATGTTGTCCAAACCTTCAGGATCTAGCCAGCCCCATTACTGTTCC
ACCTCTAAGTGCTTTATCCAACTCTCTATGGTCTCATCCCCTTCCAAAAC
ATTTGCTCACCTTTTCAATTCATTAAATATCCGTATATGTTTTAGTTTTG
ACCCCATGTTTACCCTCCCCTTCCTCGCATCTCCTTCCTGACGACCATTT
GATTCTCATTCGATAACAACTCCTGTCCCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_e18.b1 MSMg01no112_e18.b1 CHROMAT_FILE:
MSMg01no112_e18.b1 PHD_FILE: MSMg01no112_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:25 2005
         (429 letters)



>mm_chr10_104145448_104146276
          Length = 829

 Score =  814 bits (421), Expect = 0.0
 Identities = 427/429 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgctattaatgcaaattttatacatccaggagagatcagaggttttttttaattgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cctgctattaatgcaaattttatacatccaggagagatcagaggttttttttaattgatt 570

                                                                       
Query: 61  aagattccaaaacagtataacagataagcctgacaagagggaaaacagagcaacctcgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagattccaaaacagtataacagataagcctgacaagagggaaaacagagcaacctcgtg 510

                                                                       
Query: 121 gaccttgtacttggatagaaacagagactccatttttcattatgaaggtatataattctg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gactttgtacttggatagaaacagagactccatttttcattatgaaggtatataattctg 450

                                                                       
Query: 181 atccttgggacttcattactgagaacggaattttagtttccaacattaaaggtaccctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atccttgggacttcattactgagaacggaattttagtttccaacattaaaggtaccctac 390

                                                                       
Query: 241 ttaaagctgaataaaatcaaagttcataaattctgagaacacacagttttaacagcctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttaaagctgaataaaatcaaagttcataaattctgagaacacacagttttaacagcctaa 330

                                                                       
Query: 301 tgacaatctagatttggaggaagtaggtttatggagtgatttttgactagtaagtgttag 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 329 tgacaatctagatttggaggaagtagatttatggagtgatttttgactagtaagtgttag 270

                                                                       
Query: 361 gattctttaaaaccaccatagatttgagaaacagtcaatatgatagataattattaaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gattctttaaaaccaccatagatttgagaaacagtcaatatgatagataattattaaatc 210

                    
Query: 421 tctgggaca 429
           |||||||||
Sbjct: 209 tctgggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_e18.g1 MSMg01no112_e18.g1 CHROMAT_FILE:
MSMg01no112_e18.g1 PHD_FILE: MSMg01no112_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:25 2005
         (422 letters)



>mm_chr10_103987774_103988595
          Length = 822

 Score =  785 bits (406), Expect = 0.0
 Identities = 418/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctctgggaaccctgaagcatcaaggttaattgattctgttgggcttcttgttgagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctctgggaaccctgaagcatcaaggttaattgattctgttgggcttcttgttgagtt 260

                                                                       
Query: 61  cctatccctatcccttccaggttcctcaatcctttccctacatgttgataaataccttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctatccctatcccttccaggttcctcaatcctttccctacatgttgataaataccttag 320

                                                                       
Query: 121 agaataactgaaaataggatattttactttgggtcaagatcaccagacatataagtagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaataactgaaaataggatattttactttgggtcaagatcaccagacatataagtagat 380

                                                                       
Query: 181 aattggctgattaccatgctatgggcctgatgcaaagctatacatcacgatacagaacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattggctgattaccatgctatgggcctgatgcaaagctatacatcacgatacagaacac 440

                                                                       
Query: 241 acagtacgtgaaagcataccacattaaggaagacaggaaaccgagagtggatacaagaca 300
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtaggtgaaagcagaccacattaaggaagacaggaaaccgagagtggatacaagaca 500

                                                                       
Query: 301 gggccaggctaacagatatcccttcaaaggcctaatcccagtgacctccttttttcatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggccaggctaacagatatcccttcaaaggcctaatcccagtgacctccttttttcatgt 560

                                                                       
Query: 361 agtctgggtccccaagcatttaaactctttccaaagcataatatttgcatatgtcaatat 420
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 agtctgggtccccaagtatttaaactctttccaaagcataatatttgtatatgtcaatat 620

             
Query: 421 at 422
           ||
Sbjct: 621 at 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)