BAC Information

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BAC

Clone NameMSMg01-113K04
Chromosome10 (Build37)
Map Location 45,766,722 - 45,767,027
singlet/doubletsinglet
Overlap genenone
Upstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113K04.T7 (MSMg01no113_k04.b1)MSMg01-113K04.TJ (MSMg01no113_k04.g1)
ACCAG325724AG325725
length708710
length of high quality
(start - end)
306 (72 - 377)110 (66 - 175)
definitionCHROMAT_FILE: MSMg01no113_k04.b1 PHD_FILE: MSMg01no113_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:07 2005CHROMAT_FILE: MSMg01no113_k04.g1 PHD_FILE: MSMg01no113_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCGCTAAACGACTCCTATTTCGAGAGGACCGCGGAATCCATTTC
TGTCCCGAATAGAACAAGAGGATCAACATGCTTCGGAATATGCAGTAGAA
AGATCACTCGCTCCTCACAGGCCCTGATACCAACATTCATCTTAGTACAT
AAAAGAGAAAACACACCAAGGATGGGAACAGCACAAACAGGGACTGCAGC
AAGAGCTGCAGAGCCAACTAATTCTAACAGAGCGCAATCACTGAATTTGG
CGGGAAAGCAATACCCATCTTTAAGACAGCAACATTCGAGCTGTACTCTC
TCCTTATGAAATGTAAACAGCTCACTGATCGCTGGAAAATTTTAGGGTCT
TTATCTTGCAAGAAGCCACTGTTGCAGCTGCAAATGTGATATCACCAAAA
TGCACCCCCCTAGAGGACATAAGCAGCCCAGGTTGGTACATTACCATGCG
TTGTTACTCAGCCAGTTTGGAACAGGGCAATACCTTGGCTGACTGACAAG
CATAGGAACTCAAAACGATGACACTGGCTGCTTTTTGTGTTTGCCATCAC
AGTATTTGCTTCATATGTTGTTCACACTTAGCTGTGCACGCTGAGTGGCT
TTTGAAAATCCTCCTTCGAGAATCATTTTCCACCAATTCCGCAATCCTCT
TTTTTCCATTGGAGATTTTAAAAGGTTGAATTCTGGCACGTTGGATTAAA
CCGCCCAA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTATTAGCTTTGCAACCTAGAGGATGTTTTGTTCC
TCTGCGTGTCTAACTCTCACCATGGGGAAAATGCTAGAACCCACTGCACA
GGGTTTTTGTGTGAAGTAAATGAGAAAACTCATGAAAAGCACTCAGTGCA
AATCTGCCTCATAAAAAGCACTCAAAAATGATAGCAATCCCTATTAACAG
TGGGGGGAAAAAAGAGGAAGACATTCTTCTAATAGACTAGACACCAAATT
GTAAACTTTTTGAAAGGTGCCCTTAGCTAGGACATAGTCTACCCAAGAAT
TGAATCACTCAGCTTGTTTGAAAGCGATCTTGAATATTATTATGCCACAT
AGTCATTACCACGCAGGCAACATAAGGGCATTTTATGCGGTTTTATTTGT
ACAAAGACATGTCTGAAAAATGCTTGAGAATACACAACACAAAGTTATAC
AAAAGTGGCCTGAGCATATATTGTCTTGTTGAACTCACTTTCCATTGCTA
CCCCTCAACAATAAAGCCTGTGAACCCCGCATTTTCAAGACGCTTTCTTG
AAAGTCTTCCCTCTCTAACGACTATCGCTCTTATGCGCGCAATCGAATTT
CCTCCCCGGACTCGTGCTGAAACCTCTGCCAACCATCGAGCGCATTCCCC
TACTCATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_k04.b1 MSMg01no113_k04.b1 CHROMAT_FILE:
MSMg01no113_k04.b1 PHD_FILE: MSMg01no113_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:07 2005
         (306 letters)



>mm_chr10_45766522_45767227
          Length = 706

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaacatgcttcggaatatgcagtagaaagatcactcgctcctcacaggccctgatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atcaacatgcttcggaatatgcagtagaaagatcactcgctcctcgcaggccctgatacc 260

                                                                       
Query: 61  aacattcatcttagtacataaaagagaaaacacaccaaggatgggaacagcacaaacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacattcatcttagtacataaaagagaaaacacaccaaggatgggaacagcacaaacagg 320

                                                                       
Query: 121 gactgcagcaagagctgcagagccaactaattctaacagagcgcaatcactgaatttggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgcagcaagagctgcagagccaactaattctaacagagcgcaatcactgaatttggc 380

                                                                       
Query: 181 gggaaagcaatacccatctttaagacagcaacattcgagctgtactctctccttatgaaa 240
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 381 gggaaagcaatacccagctttaagacagcaacattggagctgtactctctccttaggaaa 440

                                                                       
Query: 241 tgtaaacagctcactgatcgctggaaaattttagggtctttatcttgcaagaagccactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaacagctcactgatcgctggaaaattttagggtctttatcttgcaagaagccactg 500

                 
Query: 301 ttgcag 306
           ||||||
Sbjct: 501 ttgcag 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)