BAC Information

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BAC

Clone NameMSMg01-115H20
Chromosome10 (Build37)
Map Location 84,422,158 - 84,422,283
singlet/doubletsinglet
Overlap geneRic8b
Upstream geneC230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690
Downstream geneFhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115H20.T7 (MSMg01no115_h20.b1)MSMg01-115H20.TJ (MSMg01no115_h20.g1)
ACCAG327108AG327109
length725711
length of high quality
(start - end)
125 (95 - 219)128 (132 - 259)
definitionCHROMAT_FILE: MSMg01no115_h20.b1 PHD_FILE: MSMg01no115_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:27 2005CHROMAT_FILE: MSMg01no115_h20.g1 PHD_FILE: MSMg01no115_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACCAATTAGTCATTTCGCGGAANNACCTCGATAANCCATGACCTTGAA
NCAGAGAGAACTTACTTGTCTCTGCCTCCCGAGTGTTGGCCTAAAGGCGT
GAGCCACCTGGACTGGCCACCAGAGCACTACAGAGGGAGGTGGAGTGCAG
TAATTCTTTGTATTCTTATAAGTACTAGGAGACTTCTAATGAAGTCCAAT
GCTTTGTTATTACAAACCTTTTCCACAGCAAGTAAGAGAACTGGAAACTG
TATCAACTCCTGCTCAACTGTTTTCTGACAATGTTTAAGTGGTTTTTCAG
AGCTGGGAACTAAATCCCAGGACTTTTTTTTTTTCCACACCCACCCCACT
GAGCTGTTCATCCCTAGTTTTAGACAACACCCCCCTTAATGTCATTAACA
GACAAGTTATACACCTGCCCCTATCTTTATTTTATATGTATCTATTACTT
TGTGGGGGGAGGCATGCGCATACTGGTGTGTGAACTAACCCCGCTGTTCC
CTATCCCCCTCCTATACCCCCGCCCTCCCGCTCCCCATCTCTCCCCTCTT
TTCTTCCCTCTTATCCCCGCCCCCTCTCCTCCCTACCCTCGCATATCCCC
CCCGCTCACACCCCCCTTAATCCCCCCTTTTTTTTTTTTTTTTGTCCCCC
TACGATCCTTCACTTCGCCATTTCCCTTCCTTTCCCCGCACCCACTTGTC
CCTTCTATTCTTCTTCCTCCCCCCN
CCATTCCCCTCGATGCAGTGGGAGGCCTGGCGGCGCCTGTTTCCAACCTG
TAGGNGAACNANAGAAGTACCANCACCGATCTCNNGGAGAATNNCNACAG
AAGNAGACCTTCAAAGCTCATGCGNGACCACATGGCAGNCAGGAAAACAT
ATATATAACACTTAATATTAATACTTGTGTGTGTGTGTATATGTGTACGC
ATGTGTATACATAGATTGGATTGTTATGCCCCATGGCAAAATTGGTCTAC
CTAGTACTTTTTTAAGAAATACAGGCTGTATGTTTCAAAAACTTTATTCC
TACCCACCCACCACTAGAACTCATTTTCTTATTTTTGACCAGGCCCACAG
CCGACAAAAAAAAAGATTTTCTACCCACCCCCCACTTGAGATATAAGTTA
TTACCAGTCAGATCCTTAACCGCCCCCCAGACCTGAATCCTCACTTTCTC
TTGTTTAAATAAAATACCTTCCGAAGTATATTTTTCCGTACGAAGCCCAT
AATTTCCATACTGATGTGCCCTGTCTTTAGATTCCCATTTCTGTTTGACA
ACCCTTTCTTTTCTGTACAACTCATTTGACCCCTGAAACCACCATCCCTA
CTCTTCCTTCAGACCCCTTCCCTTAATGCCCTATTTCTCACGTTACCCCA
ACTCCGTCCCCCCTCCTTCTTTTTCTTACTTTGCCCCTGCCGCTAACTAT
GTTATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_h20.b1 MSMg01no115_h20.b1 CHROMAT_FILE:
MSMg01no115_h20.b1 PHD_FILE: MSMg01no115_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:27 2005
         (125 letters)



>mm_chr10_84421958_84422483
          Length = 526

 Score =  221 bits (114), Expect = 2e-62
 Identities = 123/126 (97%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcgtgagccacctggactggccaccagagcac-tacagagggaggtggagtgcagtaa 59
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 326 aggcgtgagccacctggactggccaccagagcccatacagagggaggtggagtgcagtaa 267

                                                                       
Query: 60  ttctttgtattcttataagtactaggagacttctaatgaagtccaatgctttgttattac 119
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 266 ttctttgtattcttataagtactaggagacttctaatgaagtcaaatgctttgttattac 207

                 
Query: 120 aaacct 125
           ||||||
Sbjct: 206 aaacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 526
Length adjustment: 8
Effective length of query: 117
Effective length of database: 518
Effective search space:    60606
Effective search space used:    60606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)