BAC Information

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BAC

Clone NameMSMg01-116P23
Chromosome10 (Build37)
Map Location 115,248,693 - 115,398,288
singlet/doubletdoublet
Overlap geneTspan8
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073
Downstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116P23.T7 (MSMg01no116_p23.b1)MSMg01-116P23.TJ (MSMg01no116_p23.g1)
ACCAG328240AG328241
length718704
length of high quality
(start - end)		572 (80 - 651)280 (73 - 352)
definitionCHROMAT_FILE: MSMg01no116_p23.b1 PHD_FILE: MSMg01no116_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:24 2005CHROMAT_FILE: MSMg01no116_p23.g1 PHD_FILE: MSMg01no116_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,397,717 - 115,398,288)(115,248,693 - 115,248,972)
sequence
NNNTTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGAGGCTTGCAAGATGTTTACTTCTTGAGTCTGATGA
GCATCCCTATAGAATAGAATGTTTAACTTTCCTTTCAGATAGTCTGTTCC
TTAATGTCCCTTCTAACAGCCTGTTCCTTAACAAACTTCCCTCCAAGACA
GGTAGTTTTGTCTCAGAGGAAATTGCTACATACCACCAAACACACGTAAA
CAAATAAGTAATGAATAATAATGCCAATAGACTACGTGAAACTCTAAATA
TATGAAAAATACTTTGTGATGGATTTGTCAAATTTCAGTTATAAATGATT
TCATATGTCTATTAAGATCAGAGTATCCACCAACTAGTATTTCATGAGTA
TATACAATTAAGGTCAATTAATCATGAAGAAAGAATATTTTTTATAACTC
AATTGGAAAATATTAAGACAAGTTAATCTATTTGTATGAGTGAGGTCACC
ATGTAATATTAGTTTTGTGTTCTAGGTTATTGCCACAAGGAAATTTAAAC
AGAGACTTCTTACAGTTTCATTTGACCTAAAATAATTCTTCTTTCTCAGA
ATTGGTATAAATAATCACCTATATGTATGGATTGCGTTGTACTTTTAAAA
ATTTATTCTTGTTCATATCCAATTATGCTTTATCAAAAAAGAGGATAAGG
AGAAGGAGGTAGAGGAGG

TTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCACTTGCTAGACCCTAGTTTGGATTA
TGAATAAAATGTCTGTTTATTCTTGGTCAGTCATGGGGCAAGCCTGGGTT
GGATTCAGTGAGTGCTCTGTCGGCTCTTTCCGTTTTTAGAGGTTAGTGTT
TGGCATAAGCCTTAAATACCTCTGCCCAAGTCTTCTGTTACTATGACTCT
ACTTATAAATTTTCACTAGTGACCTTAACTCACTTCCTAGGGTTTAATCA
CCATTAACTCAGAACCTAATGACGCTCAGCAGCTAATGTAAACCCTGTGA
GTGTGTCTTTTTAAGGACCCATCTCCGAGAGCTCCCAGAAAATCAGGCTG
CCCTTTACACTTAAGAGTCAAGCAACCAGTGCACATATAGGCTATAAGAG
TGCACTGTCCAGTGAAGCTGAAATGGTTATTTCAAAGTCCTGTTCTGTGT
TCCTTAGTCAATTGATGAGCACTGAAGCCCCACCATGGTTATGAATGCTA
CTTTGCAGAAAGCAAAAGAAAAAACAACCCAACCTCGATTAACTTCTCAG
AGATCAGGCAGTAAAGTCCTCATGTCTTAAACAGATAGATCAATCATTCT
GTAACTGAATGCTCTCTCTTTAATTTGCCCCCATCCAACGCACCTTCGAC
TTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_p23.b1 MSMg01no116_p23.b1 CHROMAT_FILE:
MSMg01no116_p23.b1 PHD_FILE: MSMg01no116_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:24 2005
         (572 letters)



>mm_chr10_115397517_115398488
          Length = 972

 Score = 1091 bits (564), Expect = 0.0
 Identities = 570/572 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacttcttgagtctgatgagcatccctatagaatagaatgtttaactttcctttcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tttacttcttgagtctgatgagcatccctatagaatagaatgtttaactttcctttcaga 713

                                                                       
Query: 61  tagtctgttccttaatgtcccttctaacagcctgttccttaacaaacttccctccaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tagtctgttccttaatgtcccttctaacagcctgttccttaacaaacttccctccaagac 653

                                                                       
Query: 121 aggtagttttgtctcagaggaaattgctacataccaccaaacacacgtaaacaaataagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aggtagttttgtctcagaggaaattgctacataccaccaaacacacgtaaacaaataagt 593

                                                                       
Query: 181 aatgaataataatgccaatagactacgtgaaactctaaatatatgaaaaatactttgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aatgaataataatgccaatagactacgtgaaactctaaatatatgaaaaatactttgtga 533

                                                                       
Query: 241 tggatttgtcaaatttcagttataaatgatttcatatgtctattaagatcagagtatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tggatttgtcaaatttcagttataaatgatttcatatgtctattaagatcagagtatcca 473

                                                                       
Query: 301 ccaactagtatttcatgagtatatacaattaaggtcaattaatcatgaagaaagaatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccaactagtatttcatgagtatatacaattaaggtcaattaatcatgaagaaagaatatt 413

                                                                       
Query: 361 ttttataactcaattggaaaatattaagacaagttaatctatttgtatgagtgaggtcac 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttttataactcaattggaaaacattaagacaagttaatctatttgtatgagtgaggtcac 353

                                                                       
Query: 421 catgtaatattagttttgtgttctaggttattgccacaaggaaatttaaacagagacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 catgtaatattagttttgtgttctaggttattgccacaaggaaatttaaacagagacttc 293

                                                                       
Query: 481 ttacagtttcatttgacctaaaataattcttctttctcagaattggtataaataatcacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttacagtttcatttgacctaaaataattcttctttctcagaattggtataaataatcacc 233

                                           
Query: 541 tatatgtatggattgcgttgtacttttaaaaa 572
           ||||||||||||||| ||||||||||||||||
Sbjct: 232 tatatgtatggattgggttgtacttttaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no116_p23.g1 MSMg01no116_p23.g1 CHROMAT_FILE:
MSMg01no116_p23.g1 PHD_FILE: MSMg01no116_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:24 2005
         (280 letters)



>mm_chr10_115248493_115249172
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcacttgctagaccctagtttggattatgaataaaatgtctgtttattcttggtcagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcacttgctagaccctagtttggattatgaataaaatgtctgtttattcttggtcagtc 260

                                                                       
Query: 61  atggggcaagcctgggttggattcagtgagtgctctgtcggctctttccgtttttagagg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 atggggcaagcctgggttggattcagtgaatgctctgtcggctctttccgtttttagagg 320

                                                                       
Query: 121 ttagtgtttggcataagccttaaatacctctgcccaagtcttctgttactatgactctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagtgtttggcataagccttaaatacctctgcccaagtcttctgttactatgactctac 380

                                                                       
Query: 181 ttataaattttcactagtgaccttaactcacttcctagggtttaatcaccattaactcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataaattttcactagtgaccttaactcacttcctagggtttaatcaccattaactcag 440

                                                   
Query: 241 aacctaatgacgctcagcagctaatgtaaaccctgtgagt 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctaatgacgctcagcagctaatgtaaaccctgtgagt 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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