BAC Information

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BAC

Clone NameMSMg01-117G08
Chromosome10 (Build37)
Map Location 29,496,188 - 29,496,359
singlet/doubletsinglet
Overlap genenone
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12
Downstream geneLOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117G08.T7 (MSMg01no117_g08.b1)MSMg01-117G08.TJ (MSMg01no117_g08.g1)
ACCAG328538AG328539
length719718
length of high quality
(start - end)
172 (136 - 307)218 (74 - 291)
definitionCHROMAT_FILE: MSMg01no117_g08.b1 PHD_FILE: MSMg01no117_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:56 2005CHROMAT_FILE: MSMg01no117_g08.g1 PHD_FILE: MSMg01no117_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAAGACCGCGGAA
TTCAACCTTTTCCCCATTATAACTTGTTTCTCTTACTACTAAGGATATAG
AGAAGACTCATCAAACATAACTAGCATGCTACAGGTTAGAACAATATTTA
AGAACACAAGGGTCGTATTTCTGACTAAATGAATGTGGATTTTATGTCCT
ATACACAATGGTGCTGACTTTGCTTTGTGTGTTTACAAATCACACAGCTA
CTGAGAATAATGCCAACTCATTGAGAATTTTATATGGAATAAGAAACAAT
CTTGGGGTACATACATTTGATTGTTAACACTAGAATGTTCCTTGTGCAAT
CATTTACCCAGTTACCCCACAGCATGATTTTCACAAATGTATGACATTTC
TCCTAATTTCTAGTCATCACAATCTATCTCTGCATAAGTCTCTTTCATCT
CACTATGGAACTATGTAAGGAAATAATTTTATTTTGTTGACAATATTATC
TGAAATTCAACTGTTTATCTGTTAGTGTGTCTGCTTTTCTTACTGTTTAC
CTGTGACTGTCCCCTACTGCTAACCAAGTAAAATATGGATTTGTACTTTC
CCTTTAAAGTTATAAATGTATTTTCTTTCATATTCTTTTTACGTCCATAT
TTGTGATTATTCTCCCATCACTAACGCTTCTAATAATACTATGTTATGCC
TTAATCACCTAATCATATT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAAGAAAATGAAACACTTCTTTCAA
ATAGCTACTTTTATTAAACTATTTGCTACCAATAAAGACCTACCCAATGT
AGTTACACATTTTATTTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCTTTCCT
TACTTCTTACCTTCCTTCTTTCCTTCCTTCCTTCTTTCTGTTTTGTTTGT
TTTTGTTTTTTTAAGATAGGTTCTCAGTGGCTTTTCAGATAACACTGACT
TTTCTGATCTCTGTATATCAGACTAGTCTCCTCTGTGTTGGGATTCAGGA
TATGCATACTATGCTTGCTTATATTCTATTTCTTGGCATGATTTTTTTAA
CATGCTAGTTTCTGAAAAGAGGATGACTTATGATCTTAGATGCCATGCAA
AACCTGTGCAGGCTTTGTTGGTTCAGACCTGTAATGTCTTCACTTGAGGG
TTTGAGGTATGAAGTTCACTATGACTGTGGTTAGGGATAGCCTGATTTGT
AGATGAGTTCCAGATCATCCTGTACCATGAAAAGGTCTTGCTTCTTAATT
TCCAAGAAGAAATGCGATTTTTGTTTCCCAAAGGTAGAGGAATGGCGTGA
TCTGTGGTTTGCCATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_g08.b1 MSMg01no117_g08.b1 CHROMAT_FILE:
MSMg01no117_g08.b1 PHD_FILE: MSMg01no117_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:56 2005
         (172 letters)



>mm_chr10_29495988_29496559
          Length = 572

 Score =  302 bits (156), Expect = 9e-87
 Identities = 168/172 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaacaatatttaagaacacaagggtcgtatttctgactaaatgaatgtggattttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 372 ttagaacaatatttaagaacacaagggtcgtatttctgactaaatgaatgtggtttttat 313

                                                                       
Query: 61  gtcctatacacaatggtgctgactttgctttgtgtgtttacaaatcacacagctactgag 120
           ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 312 gtcctatacacaatgttggtgactttgctttgtgtgtttagaaatcacacagctactgag 253

                                                               
Query: 121 aataatgccaactcattgagaattttatatggaataagaaacaatcttgggg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aataatgccaactcattgagaattttatatggaataagaaacaatcttgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)