BAC Information

Click to search

BAC

Clone NameMSMg01-118G17
Chromosome10 (Build37)
Map Location 118,341,367 - 118,341,822
singlet/doubletsinglet
Overlap genenone
Upstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223
Downstream geneLOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118G17.T7 (MSMg01no118_g17.b1)MSMg01-118G17.TJ (MSMg01no118_g17.g1)
ACCAG329298AG329299
length1,001710
length of high quality
(start - end)
---456 (70 - 525)
definitionCHROMAT_FILE: MSMg01no118_g17.b1 PHD_FILE: MSMg01no118_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:15 2005CHROMAT_FILE: MSMg01no118_g17.g1 PHD_FILE: MSMg01no118_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCGCTAATACAACTCACTATTTTCCAAAAAAANNNNNNNANNNNNNN
NNNNTANTACCCAGGGGCTGGGAGCAGAGAGAAAAGGAATAAAAGAGAGA
GAGAGAGAAGAGGGGAAGGACNNNNNNCTNCTNNNNANNNNNNNNTGGAA
AAGCTGCTGGAAAANNTCCTTAAANNCTTNNNTTNCCNNNNNNATTAAAA
AATAGGGCTTAGAGAGGGGGGGGGCTGGNNNAANNNNNNANNNGAAAAAT
GGGTGGGGTTCCTTCTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNANNNNNAAANNNNNNGGGGGGGGGAGAAGGG
GTGTGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAGAA
TATAAAAAANNNNNNNNNNNNNNNNNNNAAAAANNNNCAAAAAAAAAAAA
AAGAAGAGAAACTAAAGAGGGGGGGGTTTAAAANGGTNNNNNTCTNACTA
GTANNNNTNNNNNNNNNTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTNNNTTNAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNGGGGG
GGGGGGGGGGGCTGNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNG
GGGGGGGGGGGTGGAGGACATANTNNNNNNNTNNTTGTTATATATATAAA
A
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATCTCAGAAATTCCATGTGACCTTCCACATAATGTCCTTCACT
TACTATGGAGTCACAGTGGCACTGTTGATGAACTCAGAGCCCTTGACAAT
GGCTGAACCACATCATGGAAAAATGACTCTGCTTACAGATTCACTTATTT
ACTCTATCTGTCATATCAAAGTGCTGTGAACTGAGCCTCAGCAGCAGAAA
CACCTCATGGGTCTAAGGGCTAGAAACCTAACTGAAGGTCTGGATGGGTT
GGCTCCTGGGAGCAAGGAGAAAGGATACACTTCAGGCTTCCCGGCATCTC
TCTCCGTTTGTGTGGCCTTCCTCTGCGTGTAATCTCTCTTTATTGCCAGT
GTGAAGTTTTACGAGGAAAAATATCTAATAGGATTAAATGCCTCTCCCTG
CCCCCTTCAATACGATCTCTTTTGGACTAACTAATACTTCTGTTTCGCAA
AAGCTTATGCTTTAAGGAACTGAGGCCTTAAGACCACAGTGTATGAATTT
TGTGATCCATAACAGAATACACAGAATGTTACATATCAAAGAATGATGTC
TGTGTCAGAGTTAGTCCAAGGCACTTGCATGTTAAGTCACTGGAAAAGTG
GGGTTTACTGTCACAGTGGCCAGAGTCTCTCTCACTGTTGTTGAGATCCT
CGTCTTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_g17.g1 MSMg01no118_g17.g1 CHROMAT_FILE:
MSMg01no118_g17.g1 PHD_FILE: MSMg01no118_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:16 2005
         (456 letters)



>mm_chr10_118341167_118342022
          Length = 856

 Score =  874 bits (452), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatgtgaccttccacataatgtccttcacttactatggagtcacagtggcactgttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccatgtgaccttccacataatgtccttcacttactatggagtcacagtggcactgttgat 597

                                                                       
Query: 61  gaactcagagcccttgacaatggctgaaccacatcatggaaaaatgactctgcttacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaactcagagcccttgacaatggctgaaccacatcatggaaaaatgactctgcttacaga 537

                                                                       
Query: 121 ttcacttatttactctatctgtcatatcaaagtgctgtgaactgagcctcagcagcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttcacttatttactctatctgtcatatcaaagtgctgtgaactgagcctcagcagcagaa 477

                                                                       
Query: 181 acacctcatgggtctaagggctagaaacctaactgaaggtctggatgggttggctcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 acacctcatgggtctaagggctagaaacctaactgaaggtctggatgggttggctcctgg 417

                                                                       
Query: 241 gagcaaggagaaaggatacacttcaggcttcccggcatctctctccgtttgtgtggcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gagcaaggagaaaggatacacttcaggcttcccggcatctctctccgtttgtgtggcctt 357

                                                                       
Query: 301 cctctgcgtgtaatctctctttattgccagtgtgaagttttacgaggaaaaatatctaat 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cctctgtgtgtaatctctctttattgccagtgtgaagttttacgaggaaaaatatctaat 297

                                                                       
Query: 361 aggattaaatgcctctccctgcccccttcaatacgatctcttttggactaactaatactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aggattaaatgcctctccctgcccccttcaatacgatctcttttggactaactaatactt 237

                                               
Query: 421 ctgtttcgcaaaagcttatgctttaaggaactgagg 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctgtttcgcaaaagcttatgctttaaggaactgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)