BAC Information

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BAC

Clone NameMSMg01-125A23
Chromosome10 (Build37)
Map Location 103,940,918 - 103,941,232
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125A23.T7 (MSMg01no125_a23.b1)MSMg01-125A23.TJ (MSMg01no125_a23.g1)
ACCAG334251AG334252
length688707
length of high quality
(start - end)
319 (35 - 353)293 (92 - 384)
definitionCHROMAT_FILE: MSMg01no125_a23.b1 PHD_FILE: MSMg01no125_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:58 2005CHROMAT_FILE: MSMg01no125_a23.g1 PHD_FILE: MSMg01no125_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTTT
TACTTAAAAATGTTGATTCCTAAATTGATAAATAAAGTGTCCACAATTCA
TACAAACTACCACCGATCTCTGCAAGTGGGATAAAAACAACAGCGTACAG
ATTAAATTTTATATCTCAGTGTCTGTGGGATAGCAGAAATTGCTGTCTGC
GTTAGTCACAATGATTTATGTTTCTGTGTAAAAGCAGACTGACAGCCAGG
AATTTCTCACCTGGATTTCTCCAAGGCTGTGCATTTTAAAATTATTTTTT
TAGAGACTCTTTTAATAAAAGAATCTAAAGTAGAAAAGCTAACATACAAA
AGATTGTTTGTGAAACATTGCATTAATCTTTGACATGTGTGAAATGAAAC
ACAAGTCAGAAGAAAAAATAGACACAGAGAATATGTCAGAGCAACTGAGT
TGGAAAACATGGACACATTTGGAATTCCTAAATATAAAATCAAAGTAATA
ACTCATGTCATGAGTTGAATGTTTCTTTTTCTGTTGTTAAATGTGGAGTG
AGATTCTCTGTAACAGCAAGGTTTCTAAATGTATTAGAAGCGAGACCTTC
CTTTACTGCCCAGAAACAGCCCTGTATTTGTTTTATATGCCCGCCCAGGA
CATATTACATTGTTTTATAACTATCTGAAGATAACATT
NNCCCACCCCNNNNAAAACTATGAAGTGAGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGCCAG
TCCCACAAAACCCAGAGGAAGCTCCACTCCCAGGTGCTCTAACATGCCCA
GGACCACAGGATCCCAGGATCCCAGGAGCTTGGACACAGCAGAATCTCAG
GGTCCCAGAGGCAGGTTGAATCCCAGGAGCTCTGACACACCCAGTAACAC
AGGATCCCAGAATCACAGGATCACAGATACAACTGAACTCTGAGGAGCTC
TGACACACAGAGGATCACAGGAAGGAAAGGCCCCAGTCAGATAGAGCAAG
GGCAGGCAGCACGAGAGATAATCAGATGGTTTTAGGTAAACATAAGAACA
TAAGCAACAAAAACCAAAATTAATTGGCATCATCAGAACCCAATTATCCA
ATCATAGAAAGTCCTGTATATACCATCACACCATAAAAGCAAGATTTGGA
TCTAAAATCACTTCTCATGATGGTGATAAAGGAATTTAAGAAGGTCATAA
ATAACTCCCAAAAAAGAAACACAGGAGAACAAAGGTAAACAGCTAGAAGC
CCTTAAAGAGGAAACATAAAAATCCCCTAAAAGATTACCGGACAACACAC
TTAAAGAGGTGAAGGAAATGAACCGAACCCTCCCAGGCCTAAAAATGGAA
ATAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_a23.b1 MSMg01no125_a23.b1 CHROMAT_FILE:
MSMg01no125_a23.b1 PHD_FILE: MSMg01no125_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:58 2005
         (319 letters)



>mm_chr10_103940714_103941432
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatttttacttaaaaatgttgattcctaaattgataaataaagtgtccacaatt 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 519 gaattcaatttttacttaaaaatgttgattcttaaattgataaataaagtgtccacaatt 460

                                                                       
Query: 65  catacaaactaccaccgatctctgcaagtgggataaaaacaacagcgtacagattaaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 catacaaactaccaccgatctctgcaagtgggataaaaacaacagcgtacagattaaatt 400

                                                                       
Query: 125 ttatatctcagtgtctgtgggatagcagaaattgctgtctgcgttagtcacaatgattta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttatatctcagtgtctgtgggatagcagaaattgctgtctgcgttagtcacaatgattta 340

                                                                       
Query: 185 tgtttctgtgtaaaagcagactgacagccaggaatttctcacctggatttctccaaggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtttctgtgtaaaagcagactgacagccaggaatttctcacctggatttctccaaggct 280

                                                                       
Query: 245 gtgcattttaaaattatttttttagagactcttttaataaaagaatctaaagtagaaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtgcattttaaaattatttttttagagactcttttaataaaagaatctaaagtagaaaag 220

                          
Query: 305 ctaacatacaaaaga 319
           |||||||||||||||
Sbjct: 219 ctaacatacaaaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)