Query= MSMg01no125_f13.b1 MSMg01no125_f13.b1 CHROMAT_FILE:
MSMg01no125_f13.b1 PHD_FILE: MSMg01no125_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:21 2005
(386 letters)
>mm_chr10_8162527_8163312
Length = 786
Score = 636 bits (329), Expect = 0.0
Identities = 370/389 (95%), Gaps = 10/389 (2%)
Strand = Plus / Plus
Query: 1 aataagacataagtcttcaacaaatttaacaccaaaataaaaatattgacccagtttgtt 60
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aatacgacataagtcttcaacaaatttaacaccaaaataaaaatattgattcagtttgtt 260
Query: 61 gagcagtacgccaaggggttgtctcttcctatgtgatggcataaccacccagtagctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gagcagtacgccaaggggttgtctcttcctatgtgatggcataaccacccagtggctggg 320
Query: 121 gcacatatcttgcctttaaaaactaagcaatatccaagttcacccaacagttctgtgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacatatcttgcctttaaaaactaagcaatatccaagttcacccaacagttctgtgatt 380
Query: 181 cagcccttgaaaccagtgtctttgtatcatctgagcttcttgacataaacttgatcttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcccttgaaaccagtgtctttgtatcatctgagcttcttgacataaacttgatcttca 440
Query: 241 attctcttt-----ttttttgtgctcagaagaaaccatctcacctaagactcaaacttca 295
||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctctttacaactat-----gctcagaagaaaccatctcacctaagactcaaacttca 495
Query: 296 ccaaagttttgaaacctacatgcacttgcagatgtccctgtcctttctttccatctcctc 355
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtaaagttttgaaacccacatgcacttgcagatgtccctgtcctttctttccatctcctc 555
Query: 356 tctctccttcagtctcatgaccttatgtc 384
|||||||||||| ||||||||||||||||
Sbjct: 556 tctctccttcagcctcatgaccttatgtc 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_f13.g1 MSMg01no125_f13.g1 CHROMAT_FILE:
MSMg01no125_f13.g1 PHD_FILE: MSMg01no125_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:21 2005
(431 letters)
>mm_chr10_8239651_8240481
Length = 831
Score = 797 bits (412), Expect = 0.0
Identities = 427/432 (98%), Gaps = 2/432 (0%)
Strand = Plus / Minus
Query: 1 ttgctcccaggatcccatttctcaattttctgtggaataatctctggatggacaatgttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 518 ttgctcccaggatcccatttctcaattttctgtggaataatctctggatggataatgttt 459
Query: 61 taaaagctttcaggagaacagtcgtggagctatgaggctcttaactgccccacatctcct 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 taaaagttttcaggagaacagtcgtggagctatgaggctcttaactgccccacatctcct 399
Query: 121 gattactggactatttagaatgatttggggatcagagttgagaggcatcggaattgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gattactggactatttagaatgatttggggatcagagttgagaggcatcggaattgtgtg 339
Query: 181 gcctgagctaaatgctgttttctaatcccagggaaaccatgaagaaatctgcccagtgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gcctgagctaaatgctgttttctaatcccagggaaaccatgaagaaatctgcccagtgtc 279
Query: 241 atgctgcagtgtttaatatatctgtcttgttcacagtcctacctacctgcttatgtcact 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atgctgcagtggttaatatatctgtcttgttcacagtcctacctacctgcttatgtcact 219
Query: 301 aaatgtcacttctgtttccaacttaactcagcttggaaaagaaaaaacattattggagaa 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 218 aaatgtcacttctgtttccaacttaactcagcttggaaaag-aaaaacattattggagaa 160
Query: 361 ctgtctccaacagattg-ttttttgctcctgtctggggagcattttcttgattgctaatt 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctgtctccaacagattgtttttttgctcctgtctggggagcattttcttgattgctaatt 100
Query: 420 gatgtagggggg 431
||||||||||||
Sbjct: 99 gatgtagggggg 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
