BAC Information

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BAC

Clone NameMSMg01-126K16
Chromosome10 (Build37)
Map Location 26,938,871 - 26,939,341
singlet/doubletsinglet
Overlap geneLama2
Upstream geneSamd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126K16.T7 (MSMg01no126_k16.b1)MSMg01-126K16.TJ (MSMg01no126_k16.g1)
ACCAG335421AG335422
length703691
length of high quality
(start - end)
85 (373 - 457)472 (73 - 544)
definitionCHROMAT_FILE: MSMg01no126_k16.b1 PHD_FILE: MSMg01no126_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:08 2005CHROMAT_FILE: MSMg01no126_k16.g1 PHD_FILE: MSMg01no126_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAATTTGGCGGCGCAATACGACTCCATTTCCGAACCGACGCGCGGAAN
NCANGAATTTTCANCCACCGAGCANNGGAACNAGAAAAGAAAANCCNCGA
GNGAGGNAAGGNAACCCAACCCCAAAAGAACACACANANAAGGCACTCAC
TAGANAAGAGGANANAAGCTCAAAAGCNCAGAANACCCAAGAAACAANTC
ACAGCCCACATGAAGCTCAAGAAGGACATACAAAGCGCGGACGCTCNGGC
CCTTCTTAGAAAGTGGAAAAAATACTCATGGGAGAAAATACAGTGACTAA
GTGTGGAACAGAGACTTTTGGTATTTTCANCCAGAAACCGCCCAACCTGG
GGANCCATTTCATATCCCCCCACCAAACTCATACACTATTGTGGATGCCA
AGAAATGCTTGCTGCCCGCAGCCCGAAATAGTCTCCTATTAGTATCTTCT
GAGAGGCTGCGCCAGAGCCTGACAAATACCGAGATGGATGCTCATAGTCA
ACCATTGGACTGAGCACAGGGCCCCCAATGGAGAAATTAACAGAAAGGAT
CGAAGGAGCTTGATCAGTTTGTAACCCTATAGGATGAACCATAATATCTA
CCATCTACACTCCCTATACGTTCACTTGCTGTGAACAGACAACATGATCA
ACGTTATTCTTATTTTTACCACTTACTTGGCGCTGGCCTTACCGCTCACA
CGC
TTCCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGATCCCACATAGCTCCATAGCTGAGTT
GCTGCTGCTGCTTGTTTAGGAACAATATGATTTATTATAGGAAGGGAAAA
ACCAAGGAAAATGAATGGTAGTTAAAGAAAACAAGGAGAATAGGAAAAAA
AAAAACCAATGGAATAGGACCAATAGACCTCTGCTTCATTCTGTCCCATC
ATCCCTATGGAATAGGACCGATGGTCCTCTGCTTATCTCATTCTGTTCCA
TCATTCCTTAATGAATTTTCTGTTATCATCTGAGACCTACATTCCCATGC
CCCCTCTTTTTAAATACTTCAAAAGAAGAACAGAAAAAGCAACAGAGCCA
TTTTATATGACATTATTACAAACAAGGAGTTGTAGTATTCTATGGTCTAG
GCCCAAGAACTATATATTTACACATCTATCCACAGAACAATTAGAGACAC
ACAAGAGTTAGAATCAAAGTCTTTTCACTCTGGTGGAGCTGATCGCTGGT
AGCTGAAGAAGTGATAGTGCCTGGTTCAAGACTGGAACGATGGCAGCCTT
TTAGAGAGAACTACTTCAGCACAGGAGGAACCGGAAGTCTAACTGTGTTG
CCTGGGGTGTGTGCTGTGGTCTCACTGTGTCCCATTCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_k16.g1 MSMg01no126_k16.g1 CHROMAT_FILE:
MSMg01no126_k16.g1 PHD_FILE: MSMg01no126_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:08 2005
         (472 letters)



>mm_chr10_26938671_26939543
          Length = 873

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%), Gaps = 1/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatcccaca-tagctccatagctgagttgctgctgctgcttgtttaggaacaatatgat 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatcccacaatagctccatagctgagttgctgctgctgcttgtttaggaacaatatgat 260

                                                                       
Query: 60  ttattataggaagggaaaaaccaaggaaaatgaatggtagttaaagaaaacaaggagaat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattataggaagggaaaaaccaaggaaaatgaatggtagttaaagaaaacaaggagaat 320

                                                                       
Query: 120 aggaaaaaaaaaaaccaatggaataggaccaatagacctctgcttcattctgtcccatca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaaaaaaaaaaccaatggaataggaccaatagacctctgcttcattctgtcccatca 380

                                                                       
Query: 180 tccctatggaataggaccgatggtcctctgcttatctcattctgttccatcattccttaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctatggaataggaccgatggtcctctgcttatctcattctgttccatcattccttaa 440

                                                                       
Query: 240 tgaattttctgttatcatctgagacctacattcccatgccccctctttttaaatacttca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaattttctgttatcatctgagacctacattcccatgccccctctttttaaatacttca 500

                                                                       
Query: 300 aaagaagaacagaaaaagcaacagagccattttatatgacattattacaaacaaggagtt 359
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aaagaagaacagaaaaagcaacagagccattttatatgacattattagaaacaaggagtt 560

                                                                       
Query: 360 gtagtattctatggtctaggcccaagaactatatatttacacatctatccacagaacaat 419
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtattattctatggtctaggcccaagaactatatatttacacatctatccacagaacaat 620

                                                              
Query: 420 tagagacacacaagagttagaatcaaagtcttttcactctggtggagctga 470
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagagacacacaagagttagaatcaaagtcttttcactctggtggagctga 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)