BAC Information

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BAC

Clone NameMSMg01-127P04
Chromosome10 (Build37)
Map Location 43,063,333 - 43,063,724
singlet/doubletsinglet
Overlap genePdss2
Upstream geneLace1, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik
Downstream geneLOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127P04.T7 (MSMg01no127_p04.b1)MSMg01-127P04.TJ (MSMg01no127_p04.g1)
ACCAG336349AG336350
length730701
length of high quality
(start - end)
---392 (75 - 466)
definitionCHROMAT_FILE: MSMg01no127_p04.b1 PHD_FILE: MSMg01no127_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:52 2005CHROMAT_FILE: MSMg01no127_p04.g1 PHD_FILE: MSMg01no127_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATCAAATTTGCGGCGTTATATACTCTTATATTCAAGAACTGTGGAATT
CCTCTGTATTTCCCTAAACTGAGTTCAACTCCAGTGTCCTCTGTCTAGAG
GGTGGGCCATCACTTCTCCCCCAAATTTGAATTTTGAATCGCAACGGTTA
TGCTAGTTCTTCCTAGCCCTGTGAAGGTTACTCTATCTTACCAATTCTCT
GATTTTACAGCTCGGATACTTTCACACCTTTCCAAAACTCCGGTTGCGCC
AATTGCGTCCATAGTATATTTTCTTTTATACAAAACACCTCTTTCCAGGC
TTTTCTTTTCGTGTCTGATTATCTGTTTACGTGTGCATACTGTACGAAAC
TACCCTTCACTGTCATACTCCGTCGTCTCGTGGTAATTTTTCTCATTTTT
TGACCGATGCTTTTCTTCCCCACCCCCCTTCACTGATTATCTTGTCCTGT
TCTTGTTTCCCGTTCCACCTTTTATCCTGTTTCTTCTCCACCTTTTTTGC
CTTATATGTTTTTCGACCAATTTATCCCACGTCTTTCTCTTTCACCCCCC
CATTCCCTGTCTCCCAAATTTCTTTTACTTTTTCCCCTTTTCCCCCTTTC
CCCCCACGCCCTAACACCGCTTTTCCCTCTATGTTTTTATGCCCCTTCCA
TTTTTTTTTCGCCTTTGTTGTCTTCCTTGAACCTTTATTTGCACATTGCC
TATCATATCACCCAAAAATATTTCTATAAC
TTCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTCTCTGTTTCCTCACTTCCTGTC
AGGGATGGCTTACTTGGGTGTGCAAGGACTCGCCACTGGGCTACCTTGTG
AAGTAGAAAAAAATGACATTTTTTCAAGCTGTTGTTGGTTAGGATAAATC
TATTGATTTGGTTCTAATAAAAGGATTTGGGGATACCCTGATTAACTTTC
CCACTTGCTTTGAACAAAAATAAGCAAGCTTGGGACTGGAGAGATGGCTG
ATCAGTTAAAAGCATTTACTGCTCTTCCAAGGAACCCAGGTTTGGTTCCT
AGCACTCATGCATGTTGGGTGTCTCACAAGCATCTTTAACTGCAGCTCCA
GTGGATCTAATGCCTTCTCCGCACTCCGCAGATGCCTGCATTCAAAAAAG
GACAAGCCCACACATAGCATGTACACACACATACCAATAATTAATAATAA
ATATGGTAAAAACAAAACATGCTGGGGATGGTATTCCAGCGCTCAGGATA
CAGAGAAGGACAAATCTTTGTGGGTTTGAGGTTAGTCTAGTCTACATATT
TTCTAGGACAGTCTAGATTACCTGGTAAACCATTTCCCGCGGTGGGAGTA
TGAGCACCAGATGCAAGAGGCCTTAATTTTTTTTAAGAGTGCATTTTGTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_p04.g1 MSMg01no127_p04.g1 CHROMAT_FILE:
MSMg01no127_p04.g1 PHD_FILE: MSMg01no127_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:53 2005
         (392 letters)



>mm_chr10_43063133_43063924
          Length = 792

 Score =  704 bits (364), Expect = 0.0
 Identities = 385/392 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttctctgtttcctcacttcctgtcagggatggcttacttgggtgtgcaaggactcgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttctctgtttcctcacttcctgtcagggatggcttacttgggtgtgcaaggactcgcc 260

                                                                       
Query: 61  actgggctaccttgtgaagtagaaaaaaatgacattttttcaagctgttgttggttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgggctaccttgtgaagtagaaaaaaatgacattttttcaagctgttgttggttagga 320

                                                                       
Query: 121 taaatctattgatttggttctaataaaaggatttggggataccctgattaactttcccac 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 taaatctattgatttggttctaataaaaggatttggggaaaccctgattaactttcccac 380

                                                                       
Query: 181 ttgctttgaacaaaaataagcaagcttgggactggagagatggctgatcagttaaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttgctttgaacaaaaataagcaagcttgggactggagagatggctgagcagttaaaagca 440

                                                                       
Query: 241 tttactgctcttccaaggaacccaggtttggttcctagcactcatgcatgttgggtgtct 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttactgctcttccaaggaaaccaggtttggttcctagcactcatgcatgttgggtgtct 500

                                                                       
Query: 301 cacaagcatctttaactgcagctccagtggatctaatgccttctccgcactccgcagatg 360
           ||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 501 cacaagcatctttaactgcagctccaggggatctaatgccttctctggactccgcagatg 560

                                           
Query: 361 cctgcattcaaaaaaggacaagcccacacata 392
           |||||| |||||||||||||||||||||||||
Sbjct: 561 cctgcactcaaaaaaggacaagcccacacata 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)