BAC Information

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BAC

Clone NameMSMg01-129J16
Chromosome10 (Build37)
Map Location 87,547,000 - 87,547,343
singlet/doubletsinglet
Overlap genenone
Upstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps
Downstream genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129J16.T7 (MSMg01no129_j16.b1)MSMg01-129J16.TJ (MSMg01no129_j16.g1)
ACCAG337572AG337573
length779715
length of high quality
(start - end)
344 (187 - 530)238 (127 - 364)
definitionCHROMAT_FILE: MSMg01no129_j16.b1 PHD_FILE: MSMg01no129_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:04 2005CHROMAT_FILE: MSMg01no129_j16.g1 PHD_FILE: MSMg01no129_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTCTTTCTCTTCCCCTTCCTTCTTTCTCTCTTCCCTTCTNCCGACA
TTCNNCCCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATCCTGCTACCCACAATCCAGGAGCCTCTGGGCTA
TGTTATATAGTTAACAGGGAAATGTGGTTTTTTCGGTCACTCAGAATCAA
CAATACTTAGCCGGACATGCTGGCTCTCACCTACCATCCTAGGATTCTAC
AGGTAGAGGCAGGGGGATCATGACTTCAGTACCAGTCTCAGCCATACACA
GTGAGGTCAACCTGGTCTTAGATCTTGTTACCAGATGGAATGTTGTATTT
AGTGTGATATAAACAGAAACCAATCAAAGCGTCTGTTGTAAAGACTAGAA
TATACTCAAATATTCGAATTTTATAGTGGTAATTTTGAGAATTCCCTTCA
TGCTCTTGTCACAAACAAAGATTTAAGTCACATTAAAAGTTGACGAATAT
GCTTAAAACAATATGCATGATCTTTTTTTAGCTCCTCAAAAAGATGATTT
TTGAATTTTGTTTAATTCCTAGCAATTTTGGAGTCATCTGATATCTTTCT
TCCAGAAAAACAATCTGATGATATCTTTCAACATTGGGTTACCAACAAGA
ATTTGTTATATTTATACATTGATTCATAATTCCAGGTTTCTTCACATTAT
TTATTGTAAAGCTACATTGAATCTTCATTGTTATGCATGCTAGGAATGTA
CTCTCACGGATGTTTTGCCCCCTCTTTAT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGGGCCAGTTCTGAAGCAGGCAAAT
GATTTGGATAGCACAAATGGACCCGGAAGTCCCTGAGTCCCCCGAAGGAG
AGGAGCACTAACCTTATACCACACATCACTAGAACCAGAAGCATGTCAAC
TTCTGCTCCTATAGGGGACAGGTCAGAATCACCCAAGGTAAAAGCAAATT
GAATTTATATAAGTTGCACAGGTGAAGTTTCCATTGCTCTCGGGATGCAT
AAATCTTCTCAGTACCGAGGGATGAAAATATAAACAAAGAACTCTAGCTT
TAAAAATTCCATTTTATTGCTCCCCCCCCCTATTGGGGTTTCATCATTGG
CTGATTGATTGATTGACTGATTGATAAGAAGATTAAGTGGACGAGCGAAA
GCTTTGGAGTATGCTTCCAAAACTGATATGCAAAAGCAAAAGGCACCTTC
ATCAGGATGCTGAAATATAAAGCCCTTCCTAAATAATGCATCCTGCACAA
CTGAGTATGGCACATATATGCACAATTACAAAGTGCCAGTTAAATTCCTA
ATAACATCTGAGATACAGAAACATATACCACGTGGAAAAAATGTTGAGAG
AGACAGTTATTTCCACAGTTAACATGATAGAGTTCTTCCCTCTTCCTCGG
CCCCTAAGATAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_j16.b1 MSMg01no129_j16.b1 CHROMAT_FILE:
MSMg01no129_j16.b1 PHD_FILE: MSMg01no129_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:04 2005
         (344 letters)



>mm_chr10_87546800_87547543
          Length = 744

 Score =  619 bits (320), Expect = 0.0
 Identities = 338/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactcagaatcaacaatacttagccggacatgctggctctcacctaccatcctaggatt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 544 tcactcagaatcaacaatacttagccggacatgctggctctcatctaccatcctaggatt 485

                                                                       
Query: 61  ctacaggtagaggcagggggatcatgacttcagtaccagtctcagccatacacagtgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctacaggtagaggcagggggatcatgacttcagtaccagtctcagccatacacagtgagg 425

                                                                       
Query: 121 tcaacctggtcttagatcttgttaccagatggaatgttgtatttagtgtgatataaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcaacctggtcttagatcttgttaccagatggaatgttgtatttagtgtgatataaacag 365

                                                                       
Query: 181 aaaccaatcaaagcgtctgttgtaaagactagaatatactcaaatattcgaattttatag 240
           || |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 364 aagccaatcaaagcgccagttgtaaagactagaatatactcaaatattcgaattttaaag 305

                                                                       
Query: 241 tggtaattttgagaattcccttcatgctcttgtcacaaacaaagatttaagtcacattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tggtaattttgagaattcccttcatgctcttgtcacaaacaaagatttaagtcacattaa 245

                                                       
Query: 301 aagttgacgaatatgcttaaaacaatatgcatgatcttttttta 344
           |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 244 aagttgacgaatatgcttaagacaatatgcatgatcttttttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)