BAC Information

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BAC

Clone NameMSMg01-130B07
Chromosome10 (Build37)
Map Location 97,499,389 - 97,500,005
singlet/doubletsinglet
Overlap genenone
Upstream gene4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
Downstream geneEG667438, EG432494, Atp2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130B07.T7 (MSMg01no130_b07.b1)MSMg01-130B07.TJ (MSMg01no130_b07.g1)
ACCAG337924AG337925
length1,207707
length of high quality
(start - end)
347 (475 - 821)617 (73 - 689)
definitionCHROMAT_FILE: MSMg01no130_b07.b1 PHD_FILE: MSMg01no130_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:43 2005CHROMAT_FILE: MSMg01no130_b07.g1 PHD_FILE: MSMg01no130_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGACCCTTNNNNGAACACTGCGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAGGCAAATGGATGCCATTAAAATATATACTGAATGA
GGCAACCCAATAACAAAACCCTGAAGATTGTATACACTCACTGATAAGTG
GATATTAATCCATAAGCTCAGAATACCCAAGATACAATTCATCCACCAAA
TGAAGCTCAAGAAGAAGGAAGACCAAAGTATGGATACTTTGGTCCTACTC
AGAAGGGGGGGAACAAAATACTCATGGGAATAAATACAGAAAGAAAGTAT
GGAGCAGAAACTGAAGGAAAGATCGTCCAATGACCACCCCACCAGGGGAT
CCATTCCACATACAGTCACCAAACTCAGACAGTATTGTGGATGGCAACAA
ATACTTGCTGATAGGAGCCTGATATAGTTGTCTCTTGAGAGACTTTGCTA
GTGTCTGACAAATACCGACCCGCATGCTCTCAGTCAACCTTTAAACTGAG
CACAGGATCCCCAATGGAAGAGCTAGAGAAAGGACCCGAGGAGCTGATGG
ATCTTGTAGAACCATAGGAGGAACAACAATATGAACAAACCAGTACCCTC
AAATCTCCCAGGTACTAAACCATTAATCAAAGAGTACATGGAGGGACCCA
TGGCTCCAACTGCATATGTAGCAACAAAGGCCTTGTGGGACATCAATGGG
AAGAGAGGCCGTTGGTCATGAAAAGGCTCAATGCCCCAGAGTAGTGGAAT
GCCATGACAGGGAAGCAGGAATGGGTGGGTTGGTGAGCATGGAGGAGGAG
GGATGGAATAGTGGGTTTTCAGAGGGGAAAACGGGGAAGGGTATAACATT
TTTATTGTCAATTTATATAATATTCATTATTCTCATTGAATCATTAAACT
TTTTATCTTTACCCTTTTTTCCCCTAACGAATTAATGACGATTTAATGTA
TCGACTTATATATTTCTCTATCTAATGTCTGTATCTTTTCTTAGTTATTT
TTTCACGTATTTTCTTTATCATCTACTTAATTATTGTACCTCCTCTCTTC
TATACCATCTTTTTAATTCTGTATCTCCTTTTCAACCTTTCTTTCTCATC
TTTTAGATTTTCTCTCTCTCTTCCTTATCTGTTGATGACCTCTTCACTTT
GTCTTTATTCTTAAAATNTGCCTCCTTATCTCTTATATTTTTCTTATTTT
CTCTGTG
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGCCTGACTTCCCTCTGAAGTGAACT
GCTCCCTGGAAGTATAACCTGAAGTAAGCACTTTCCTACCCAAGTCCTGT
TCTGGGCCAAGCCAATACTGGACCTCTGAATAATCATTGTTGGAAGGTGC
TATTTTTGACCTACCCCTTCCTGTTGCTTTATTGGCTACTAAAATACTCA
TTAGTGTTCCTATTAATGAGACCTCCAAGGTCCAATGGACATTTACAACT
GTGCAAGGCCAAAAATACCAAATCAAACTAAAATAAAACAAAAAACCTTG
AAATTAATCAAAAACAAATCTAAGGATGCATGCAGTTCTCTTAGACTGCT
GACAGATAAAATTTATCTGAAGCAAGAGAGCCTGAAAGACTCTCCCTTTA
AATGAGAGATTTAATGTTCATAGTATGAAATTTCAGGAAACCTAACCTCC
CACCTGAAATGCTGAAATGTTAAGCTTAGGATATCCAGCTCTATAATTAA
AAAAAAATTAAAGGAGCCTGGAAAACTATATTTACATATAATAACTATTC
CAATATAGTTTCTTCTCTGAAGTGATTTTACCACTCATTTTAGTGTAATG
TGTTATGTCTGGAAGATACAAAAACTAGCTGATGTCAGAGATAAAAGAAT
GCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_b07.g1 MSMg01no130_b07.g1 CHROMAT_FILE:
MSMg01no130_b07.g1 PHD_FILE: MSMg01no130_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:43 2005
         (617 letters)



>mm_chr10_97499189_97500205
          Length = 1017

 Score = 1116 bits (577), Expect = 0.0
 Identities = 607/617 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcctgacttccctctgaagtgaactgctccctggaagtataacctgaagtaagcact 60
           ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||
Sbjct: 201 ctggcctgacttccctctgaagtgaactgctccctggaagtgtaagttgaagtaagcact 260

                                                                       
Query: 61  ttcctacccaagtcctgttctgggccaagccaatactggacctctgaataatcattgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctacccaagtcctgttctgggccaagccaatactggacctctgaataatcattgttg 320

                                                                       
Query: 121 gaaggtgctatttttgacctaccccttcctgttgctttattggctactaaaatactcatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gaaggtgctatttttgacctaccccttcctgttgctttattggctactgaaatactcatt 380

                                                                       
Query: 181 agtgttcctattaatgagacctccaaggtccaatggacatttacaactgtgcaaggccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgttcctattaatgagacctccaaggtccaatggacatttacaactgtgcaaggccaa 440

                                                                       
Query: 241 aaataccaaatcaaactaaaataaaacaaaaaaccttgaaattaatcaaaaacaaatcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataccaaatcaaactaaaataaaacaaaaaaccttgaaattaatcaaaaacaaatcta 500

                                                                       
Query: 301 aggatgcatgcagttctcttagactgctgacagataaaatttatctgaagcaagagagcc 360
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 501 aggatgcatgcagttctcttagactgctgacagattacatttatctgaagcaagagagcc 560

                                                                       
Query: 361 tgaaagactctccctttaaatgagagatttaatgttcatagtatgaaatttcaggaaacc 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tgaaagactctccctttaaatgagagatttaatattcatagtatgaaatttcaggaaacc 620

                                                                       
Query: 421 taacctcccacctgaaatgctgaaatgttaagcttaggatatccagctctataattaaaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 621 taacctcccacctgaaatgctgaaatgttaagcttaggatatccagctctgtaatttaaa 680

                                                                       
Query: 481 aaaaattaaaggagcctggaaaactatatttacatataataactattccaatatagtttc 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaattaaaggagcctggaacactatatttacatataataactattccaatatagtttc 740

                                                                       
Query: 541 ttctctgaagtgattttaccactcattttagtgtaatgtgttatgtctggaagatacaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctctgaagtgattttaccactcattttagtgtaatgtgttatgtctggaagatacaaa 800

                            
Query: 601 aactagctgatgtcaga 617
           |||||||||||||||||
Sbjct: 801 aactagctgatgtcaga 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)