BAC Information

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BAC

Clone NameMSMg01-131O11
Chromosome10 (Build37)
Map Location 92,634,681 - 92,776,275
singlet/doubletdoublet
Overlap geneEG667314, Pctk2, Elk3, LOC100041854
Upstream geneLOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik
Downstream geneLta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131O11.T7 (MSMg01no131_o11.b1)MSMg01-131O11.TJ (MSMg01no131_o11.g1)
ACCAG339285AG339286
length712711
length of high quality
(start - end)
404 (68 - 471)450 (124 - 573)
definitionCHROMAT_FILE: MSMg01no131_o11.b1 PHD_FILE: MSMg01no131_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:16 2005CHROMAT_FILE: MSMg01no131_o11.g1 PHD_FILE: MSMg01no131_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,775,875 - 92,776,275)(92,634,681 - 92,635,130)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAGAGGAGCCGCG
GAATTCACCAATATCTTTAAACCCTAGTCCGTAATGCATGCTGTTTTAAT
GCAAACTTGGCTCTCACTGCTCTAAAAGAAAAAAATCGGTAGAAACTGTT
GCTTGTTCAAGCTCAGTGCCGGAAGGGTCCTTCAGTGAACACTTTCCCCA
GAGTGGGCTGCCTTTCCATCGGTCCGTTTGGATGTCCATTCCCAAACACT
AACCCCCCCGAGGCACCCCAAATAACTTAAGCCTCTTCAAAGTAACAATG
ACTAGCCACTTTGTGGTTTCTCTCCAGAATGACCAATGCTCAAGTGGCCA
GTATTTACCTGTTCTGTTCTAATTGTTTTAGGTTGATTTCTTTTCCTAAC
CCTAACTCTAACCCTGCTTTCTTATCTACCTTTTCTTTTTCCTTTTTTTT
TTTTTTTTTTTTTTTTTTTAGGGCTGGAGATTGAACTCATGGCTTTGTAC
AAGAGAGGCAAGTAATTTACCCCCAAGCTAAATCTCTAACGAGACCTGAC
CATCTGATTTCTAGAGCTTGCTTTCTGAGTGGCTGTATAGGAACGCCACC
TTCCAATCTCCCCCAAGAGAGTGGGGTACCACTTACAAATGAAGAACCTT
TCTTGACACAACCTCCCCTGAAACCCACAGGTCACCTGATGGCTCACTCC
TGAAGATAATTT
TCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTACTCAAAGAATTCTTTTTTTTAGAAACTACTTTTATTTTCT
TCCAAAGTGTGTTTTTTCTCTTTTGTTTTGTTTTTAAACTGGAGACAATT
ATTTTTGCTAATCCATCTACTTTTTATTTCACCTTTTAAAATTATTGGTG
CCTTATATCTTCCAATCTGGTATGTTAAGACACTCATTCCACATAATCTT
TTGATGTTCTTACATAGGTTTTTTTTTATTGTCCATTTATAAATGGAAGG
CAAAAAAAAAAAATTGTATACTGAAGGGTGGTATGAATGTTTATGGAAAA
AATATTGTTTTTTCTCCTCACCTCCGAGGATGTTGATCTGTAATTTTATT
TTCAAAACTGTCTTTTTATTATCAAATTTGTACTCTAAGTATGTCTGCTA
TCAGTAAGAGTTGCTTCAGGATTGGAGCATTCTTTCTTTTACTTATTTTC
TAGGTATAACTATTTCAAGAATACCTCAGTAAAACATTAGTGGTTTCCTT
AGGGAAAAGAAGCCCTTGCTGGGGGCAAAGGAACATTCGCATGGAACCGG
CTAGGGAGCTGGTTCAGTCAGAACATTGCCTTGCATGCATGTAAAAAAAA
AATGGAAGCAATGAAAGAAAGGATTTTATGTCCTTTTTAAAATATGAACC
TGAATTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_o11.b1 MSMg01no131_o11.b1 CHROMAT_FILE:
MSMg01no131_o11.b1 PHD_FILE: MSMg01no131_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:16 2005
         (404 letters)



>mm_chr10_92775713_92776516
          Length = 804

 Score =  775 bits (401), Expect = 0.0
 Identities = 401/401 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaccctagtccgtaatgcatgctgttttaatgcaaacttggctctcactgctctaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taaaccctagtccgtaatgcatgctgttttaatgcaaacttggctctcactgctctaaaa 504

                                                                       
Query: 61  gaaaaaaatcggtagaaactgttgcttgttcaagctcagtgccggaagggtccttcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaaaaaaatcggtagaaactgttgcttgttcaagctcagtgccggaagggtccttcagtg 444

                                                                       
Query: 121 aacactttccccagagtgggctgcctttccatcggtccgtttggatgtccattcccaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacactttccccagagtgggctgcctttccatcggtccgtttggatgtccattcccaaac 384

                                                                       
Query: 181 actaacccccccgaggcaccccaaataacttaagcctcttcaaagtaacaatgactagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actaacccccccgaggcaccccaaataacttaagcctcttcaaagtaacaatgactagcc 324

                                                                       
Query: 241 actttgtggtttctctccagaatgaccaatgctcaagtggccagtatttacctgttctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actttgtggtttctctccagaatgaccaatgctcaagtggccagtatttacctgttctgt 264

                                                                       
Query: 301 tctaattgttttaggttgatttcttttcctaaccctaactctaaccctgctttcttatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctaattgttttaggttgatttcttttcctaaccctaactctaaccctgctttcttatct 204

                                                    
Query: 361 accttttctttttcctttttttttttttttttttttttttt 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 accttttctttttcctttttttttttttttttttttttttt 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no131_o11.g1 MSMg01no131_o11.g1 CHROMAT_FILE:
MSMg01no131_o11.g1 PHD_FILE: MSMg01no131_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:16 2005
         (450 letters)



>mm_chr10_92634481_92635330
          Length = 850

 Score =  808 bits (418), Expect = 0.0
 Identities = 442/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttgtttttaaactggagacaattatttttgctaatccatctactttttatttcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttgtttttaaactggagacaattatttttgctaatccatctactttttatttcacc 260

                                                                       
Query: 61  ttttaaaattattggtgccttatatcttccaatctggtatgttaagacactcattccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaaaattattggtgccttatatcttccaatctggtatgttaagacactcattccaca 320

                                                                       
Query: 121 taatcttttgatgttcttacataggtttttttttattgtccatttataaatggaaggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatcttttgatgttcttacataggtttttttttattgtccatttataaatggaaggcaa 380

                                                                       
Query: 181 aaaaaaaaaattgtatactgaagggtggtatgaatgtttatggaaaaaatattgtttttt 240
           |||||||||| |||| ||||||||||||||||||||||||||||||||| | ||   |||
Sbjct: 381 aaaaaaaaaagtgtagactgaagggtggtatgaatgtttatggaaaaaagactgcagttt 440

                                                                       
Query: 241 ctcctcacctccgaggatgttgatctgtaattttattttcaaaactgtctttttattatc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctcagctccgaggatgttgatctgtaattttattttcaaaactgtctttttattatc 500

                                                                       
Query: 301 aaatttgtactctaagtatgtctgctatcagtaagagttgcttcaggattggagcattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatttgtactctaagtatgtctgctatcagtaagagttgcttcaggattggagcattct 560

                                                                       
Query: 361 ttcttttacttattttctaggtataactatttcaagaatacctcagtaaaacattagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttttacttattttctaggtataactatttcaagaatacctcagtaaaacattagtgg 620

                                         
Query: 421 tttccttagggaaaagaagcccttgctggg 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 tttccttagggaaaagaagcccttgctggg 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)