BAC Information

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BAC

Clone NameMSMg01-132B16
Chromosome10 (Build37)
Map Location 116,854,818 - 116,855,026
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6
Downstream geneLOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132B16.T7 (MSMg01no132_b16.b1)MSMg01-132B16.TJ (MSMg01no132_b16.g1)
ACCAG339432AG339433
length710687
length of high quality
(start - end)
283 (73 - 355)509 (66 - 574)
definitionCHROMAT_FILE: MSMg01no132_b16.b1 PHD_FILE: MSMg01no132_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:31 2005CHROMAT_FILE: MSMg01no132_b16.g1 PHD_FILE: MSMg01no132_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAACGGAGGCGCGGAATTC
TTGCTGTGCCACCACCACGCACACACACACACACACACAGAGAGAGAGAG
AGAGAGAGAGAGATAGACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGATCAAACCACAAAATGGAATGTGTCTTTCT
TCCAATAGGCTCCTCGTGTGGTGGGAATGCGGCTGGCAGGGTGTCATGTG
ACCTGAAGCATCCTAGCGCTTTTTAAAATGCAAGCCCACTTTTATTATCT
GCAGCCCTTCAGTGATTTTTTGTTCCTCTAACTCAGAGCCCAAATCCCCC
CAAATATTTTCTGTTCCCCCCCCCCCCTCAGGCTTTCTCTCGGCTCCCTA
CGCCGCCTCTTCCTCACACTCAATCTATATACTTAACTTCTCATTTTTAG
CTCTATGCTTCAGGCCATTCATTTCCTTACAGAAGCCTCTGTGGAGTTCC
TTCCGGTAGGGCTGGTGTTCCTTTTCCAGAGCGTTTCCTCCAACTCAGTC
ATGAACAGCGTTATTATTGGGTATCTGTTTCTCTAATTTGACTTGTAAAT
TTTCATGAGCGTGAGGGACACGCCCACTTCCCTCATCAGTGAGAGCCTAA
TAGCAACCCATAATGTGCTTGAAATGTCTGAGTACGACAGATGGCGTGCT
AGTCTTGATG
AATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCACACAGGGAGGTGACCT
ATAGAAGTTCAGCGAAATTCTTCAGGAAATAAGTGTAGGTTTTCCAAAGG
CTTATTTTATTTCATGTACGTACTGGCTGGTTTGTATGTCAACTTGACCC
AGGTTGGAGTTATCACAGAGAAAAGAGCTTCAGGTGAGGAAATGCCTTCA
TGAAATCCAGCTGTAAGGCAGTTTCTCAATTAGTGATCAAGGATGGGAGG
GCCCCTTGTGGGTGGTGCCATCCCTGGGCTGGTGGTCCTGGGTTCTATAA
GAGAGCAGGCTGAGCATGTCAGGGGAACAAGCCATTAAGTAACTTCCCTC
CAGGCCTCTGCATCAGCTCCTGCTTCCTGCCCTGTGTGAGTTCCAGTTCT
GACTTCCTTTGGTGATGAACAGCAGTGTGGAAGTGTAAGCTGAATAAACC
CTTTCCTCCCCAACTTGCTTCTTGGTTATGATGTTTGCGCAGGAGTAGAA
ACCCTGACTATGACAATGTGTATGGTCATTTTGCCTGCATGTGCATGTAT
ATGTCTGTACACTTCTGGTAGATGGGTGGGATGCCTGTGGTGGTCAGAAG
GTGGCGTTAGATCCCCTGTGACTGGAGTTAGAGGTTGGTGTGAGTCACAA
AGTGGGTGCTGGGAATTCGAACCAGATCTGCTGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_b16.b1 MSMg01no132_b16.b1 CHROMAT_FILE:
MSMg01no132_b16.b1 PHD_FILE: MSMg01no132_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:31 2005
         (283 letters)



>mm_chr10_116854544_116855226
          Length = 683

 Score =  389 bits (201), Expect = e-112
 Identities = 207/209 (99%)
 Strand = Plus / Plus

                                                                       
Query: 75  agagagagagagagagagagagagatcaaaccacaaaatggaatgtgtctttcttccaat 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agagagagagagagagagagagagatcaaaccacaaaatggaatgtgtctttcttccaat 334

                                                                       
Query: 135 aggctcctcgtgtggtgggaatgcggctggcagggtgtcatgtgacctgaagcatcctag 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aggctcctcgtgtggtgggaatgcggctggcagggtgtcatgtgacctgaagcatcctag 394

                                                                       
Query: 195 cgctttttaaaatgcaagcccacttttattatctgcagcccttcagtgattttttgttcc 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 395 cgctttttaaaatgcaagcccacttttattatctgcagcccttcagtgatttcctgttcc 454

                                        
Query: 255 tctaactcagagcccaaatccccccaaat 283
           |||||||||||||||||||||||||||||
Sbjct: 455 tctaactcagagcccaaatccccccaaat 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)