BAC Information

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BAC

Clone NameMSMg01-133K20
Chromosome10 (Build37)
Map Location 78,314,574 - 78,314,864
singlet/doubletsinglet
Overlap genenone
Upstream geneC330046G03Rik, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356
Downstream geneGA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133K20.T7 (MSMg01no133_k20.b1)MSMg01-133K20.TJ (MSMg01no133_k20.g1)
ACCAG340591AG340592
length680829
length of high quality
(start - end)
290 (72 - 361)41 (73 - 113)
definitionCHROMAT_FILE: MSMg01no133_k20.b1 PHD_FILE: MSMg01no133_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:33 2005CHROMAT_FILE: MSMg01no133_k20.g1 PHD_FILE: MSMg01no133_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAAT
TCAACTGTATTTTCTTAACACTTGATGTCACACCCTGCCTTGCCTTGGAG
CTTAGCTGAACTTATGCCACCCGGAGAAAAAAGGAGAATGCAGATACCAC
ACCACCGTTGGAGATCCTGATGGGAAGCAGGTATAAATGGAGCTAGAGTT
CTCAAAGGATGAAGCTGGGGACTCAAAAGGATGCCATGCAATGAGGAGCA
TCTGCTCACTTAGCGTTCCATGCAATCAGCCCCTATGCCTTTCTCAATTT
CTCTTCCTCTCATCTTCATCTGGTCTCCTCTTGCTTCTAGAATCTAATTC
AGATAGCTCTCTTCTTCTACACGACATCGTCCTCTTAACTGAATCCTCTG
AAAGAACAGAGCTTTCTCAATCACTTGGCGGTGCACACCTTTAATCCCAG
CACTTGAGAGGCAGAGGCAGGCAGATTGCTGAATTCTAGGCCAGCCTGGT
CTACAGAATGAGTTCCAGAACAGCCAAGACTGCACAAAGAAATCCTGTCT
CATAAAAAACAAAAACAAAAACATGATTTCAGAATTTGNAAACACATGTA
AATAGTTGATGCAATAGGATGGTCTATCATACAGTGCTTTGCTCTAATAT
GGGAGGTAGAAAGTGTAGACTCCCAAGAAG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGGGAAGAAGAAGAGGAGGAGGAATGG
GGGGAGGGGGAGCGGAGAGGCTCCCTCACCTCCTCCTCCTTTTTTTTCTC
CTATTTCTCCCCTTGCTTTTTTTCCAGCTCTGTCTCCCCTACATCCATAA
CTTTACTAAGATCATCCCCTTACTTTCACCGTGTGCTTGGGTCTAATTCT
TATCTCCCTTGACACAACACTTCTCTACTTCTGCGCGTCCAAGAGACTCC
TAACCTTCTTCCACTAGGAAAACGTCTATCATCCCCGCACGGACCTATTA
TGTTTTTCTTGTCCGTCTAAATTTGTTCCTTTCCCTTGCCCGTCCCCTAC
CCCTCTCCACCCCTTACCCGCTTTTTCATTCCCGCCCCTCCCCCTTCCCT
CCCTTTTTTACACCAATCTTTCACTACCGTTATTGTCCTTTTTTATCTCT
CACCATCCTTCTATTCCCCCCCGCTATACTGGTGTTAAAAATTATATTTC
ATCTCTTCGTCCTCTTCCGCTTTACTCCCACTTTATAACGGTCCCCCCTC
ATGCTTATTTATCGTCCATATTACCGCTTTGTCGGATCATTGTTTCGGCA
CCGCGACGCGCGTTTTTCCTTCCTCCCTACGTTTTACCCGCTACCGCTTA
TGTAATATCCCGTCTTTACTCGTTTGTATGCCCGGTGCTTGATCGTGGAC
ACTCCCATAGCCCCCCTCTTTTTTATGCGCTTGTTTTTTGATATGCCCTT
ACTTTTCTCCCCGCCCCACCCGTCAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_k20.b1 MSMg01no133_k20.b1 CHROMAT_FILE:
MSMg01no133_k20.b1 PHD_FILE: MSMg01no133_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:33 2005
         (290 letters)



>mm_chr10_78314374_78315064
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatgtc-acaccctgccttgccttggagcttagctgaacttatgccacccggagaaaa 59
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 491 ttgatgtcaacaccctgccttgccttggagcttagctgaacttatgccactcggagaaaa 432

                                                                       
Query: 60  aaggagaatgcagataccacaccaccgttggagatcctgatgggaagcaggtataaatgg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaggagaatgcagataccacaccaccgttggagatcctgatgggaagcaggtataaatgg 372

                                                                       
Query: 120 agctagagttctcaaaggatgaagctggggactcaaaaggatgccatgcaatgaggagca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agctagagttctcaaaggatgaagctggggactcaaaaggatgccatgcaatgaggagca 312

                                                                       
Query: 180 tctgctcacttagcgttccatgcaatcagcccctatgcctttctcaatttctcttcctct 239
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tctgctcacttagcgttccgtgcaatcagcccctatgcctttctcaatttctcttcctct 252

                                                              
Query: 240 catcttcatctggtctcctcttgcttctagaatctaattcagatagctctc 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 catcttcatctggtctcctcttgcttctagaatctaattcagatagctctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)