Query= MSMg01no133_n24.b1 MSMg01no133_n24.b1 CHROMAT_FILE:
MSMg01no133_n24.b1 PHD_FILE: MSMg01no133_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:48 2005
(234 letters)
>mm_chr10_47306414_47307041
Length = 628
Score = 404 bits (209), Expect = e-117
Identities = 225/233 (96%), Gaps = 6/233 (2%)
Strand = Plus / Minus
Query: 1 ttcccaataccgctaaccttcagtataaatatacaatacaacagataagcagtatttgaa 60
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 427 ttcccaacaccgctaaccttcagtataaat-----atacaacagataatcagtatttgaa 373
Query: 61 ttgacagcagttatctttagaatgtaaaggccaatttctaatctgtgagtattctcatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgacagcagttatctttagaatgtaaaggccaatttctaatctgtgagtattctcatta 313
Query: 121 cagtaacataacagctatgggggttatttatatctataatttaagtgtagcttgtctcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cagtaacataacagctatgggggttatttatatctataatttaagtgtagcttgtctcag 253
Query: 181 attcattaaacaccattttactgataaaatttagaaaaaaaatgcacatataa 233
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 252 attcattaaacaccattttactgataaaatttag-aaaaaaatgcacatataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 628
Length adjustment: 9
Effective length of query: 225
Effective length of database: 619
Effective search space: 139275
Effective search space used: 139275
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no133_n24.g1 MSMg01no133_n24.g1 CHROMAT_FILE:
MSMg01no133_n24.g1 PHD_FILE: MSMg01no133_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:48 2005
(548 letters)
>mm_chr10_47148366_47149313
Length = 948
Score = 1036 bits (536), Expect = 0.0
Identities = 545/548 (99%)
Strand = Plus / Plus
Query: 1 gtgcctgattattttccaggtcctatctctgctgggaagttttgccattcttctccagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgcctgattattttccaggtcctatctctgctgggaagttttgccattcttctccagtc 260
Query: 61 atcttttatccttcaatcctgtcagattattttgctaggcatagtagtctaggttggtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttttatccttcaatcctgtcagattattttgctaggcatagtagtctaggttggtag 320
Query: 121 ttattgcattttaaagtggatttctctaggcatttctgaaggtctatgttttcactgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattgcattttaaagtggatttctctaggcatttctgaaggtctatgttttcactgttc 380
Query: 181 tttattaaaccaatgaaaagatgatggataagaatgtttataagatattcaggcaagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttattaaaccaatgaaaagatgatggataagaatgtttataagatattcaggcaagtga 440
Query: 241 tgatccaatgttaataataataccaagatctggtctgaactaaactctgtgctagtacat 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatccaatgaaaataataataccaagatctggtctgaactaaactctgtgctagtacat 500
Query: 301 aagtcaatatttgaataatacaaagacaacctttactaagagaaaaaaaaaaaagatccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtcaatatttgaataatacaaagacaacctttactaagagaaaaaaaaaaaagatccc 560
Query: 361 aacattttcccaggcttaacatttgggattgtgttctttctatatctatatcagtatgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacattttcccaggcttaacatttgggattgtgttctttctatatctatatcagtatgtc 620
Query: 421 ttttcttagtttggggaagtttaactcaatgatcttattagaaatcctgtctcttccatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttcttagtttggggaagtttaactcaatgatcttattagaaatcctgtctcttccatt 680
Query: 481 tatgtgcttttagttcaaagtttatttcagtctgagttctctttaacatttctctatctt 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 tatgtgcttttagttcaaagtttatttcagtctgagttctctttaatatttctctatctt 740
Query: 541 tattgaac 548
||||||||
Sbjct: 741 tattgaac 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
