BAC Information

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BAC

Clone NameMSMg01-135F17
Chromosome10 (Build37)
Map Location 10,481,334 - 10,481,966
singlet/doubletsinglet
Overlap geneGrm1
Upstream geneStxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135F17.T7 (MSMg01no135_f17.b1)MSMg01-135F17.TJ (MSMg01no135_f17.g1)
ACCAG341839AG341840
length1,118740
length of high quality
(start - end)
---633 (62 - 694)
definitionCHROMAT_FILE: MSMg01no135_f17.b1 PHD_FILE: MSMg01no135_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:28 2005CHROMAT_FILE: MSMg01no135_f17.g1 PHD_FILE: MSMg01no135_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATAGAGGGAGGAGGTTTTTTNNNTCCAGGCCGAANGCCCNCCGGGTGA
ATGAAAAACGGNTTTCAAAAAAAATGGGGGGCGGGGAATAAAGGAAAAAC
CAAAAAGGTGCAGGGAGGGAGGGGGGGGGAATTTTTAAGGGGGGTTTCTC
CACAAAAAATTTTTGGGGGGGGGGGGGGGGGGGGAATTTATAATTAAAAA
AGGGGGGGGAGGGGCTTTGTGGGCGGCCTTCTTTTTTTTTATAAAAAAAA
AAATAAAATATTATTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGTTTTTT
TGTTCCCCCCCAAAAAAGGAGGGGGAAATCCCTTCTTTCCCGTGGGTTGG
GGGTGGGAAAAAAAAGGGGTTTTTTGTGTGATTGGAAAAAAAAACAAAAC
GGGGGGAGGAAAAAAAAAAAAAGAAAATTTTTTATTAAATTAAAGGAGGT
TTTTTCTTTCCCGGGGGAGAATAAAATTTTTTTTTTTTTTATAAAACCAA
AAAAAAAAAAAATTAATGTAATATAAAAAAAAATAAATTCAATTTTGTGT
TTTTCCGGGGCCTGGGAAAATGGAAAAAATACTTAGGAAAAGGATGGAAA
TATAAAGGCAAGATAAAGAAGCCTTTACAGGTTATTTTTAATTTATTATT
TGGTCTAAAAGTTTGGAAAAAAAGTGGGAAAAAGCTATAAAAATAATTGG
TATTTGGAAAGTAATGGAAATTTAAAAGGTTACGAAATAATGGAAATTAA
ATTGTTAGAAAAAAAAGGGGTTCTTAATGGATAATAACCGAGAAATTAAA
GGGAAAGTTATAGTGAGGGGAGAAAAAAACGGGTTACGAAAGGTAATAAT
AATAATTGAAAAAATAATTTGTTCTGAAAAATTTTCGTTCTGAAATGCCA
TACGGAATGGAAAAGGAAATAATTTGAAATGTACTGGTTTGGGAAATGGA
GACTTATTTGGAAAAAGGGAATTTTTTCTAAAGAATTTTCTAGGATTTAT
GTATAGAAAGAAAAAAAGGGAATAATTTCTTTTCTTCGTTCCCNATCTCN
TAAATATATGTTAACAAAAATTATTGTAATTTGTATGAAGAACAAGAAAA
GTCCTAGGTGGTAAAAAN
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCTCTAGAACCTGCCCAGTAGGAAGAGCGACTACTCT
GGTCACCATCAGGCATGGGTGTCTGCATGACTCTTTCTTTCCTTCAAGTT
TCTCAGATCTTAACCCAGACCTTCTCTTTATTTTCTGTTCAGCTTATTTG
AGTTTGAGAAGGTACTTCTGGATCACAATTCTAAATGTTCTGCTGTGGTT
GCATTTTCTGAGAACACACCCTATAAGGTGTACATCAGGGTAGCCTGAAC
AATAGTCTCTGGGCTCGGGGGTTCTACATTTGATTAGATTTGTGCAGCCA
AACACAAGAGATCACTCTCCATCCTTATCCAGTCTGTAATGTCCCGTGTT
TGCCTGGTGATGGACATATGATACTAGGGATGTTTTAGTTTTCTGCAGCT
AGATGACTCTACTATGTTCCCACCTTTAATTTAAAAAAGGAAGAAAGAAA
AGAAGATTGTAAAATTAAAAGAGGCTATAAAATGTTATTGCATGTTTGCC
AAACTAATAACATTATTTCTTCCATAAAAAGGTTTCACTTGGGGGAGATA
TTAGTCAAATATTCACTGGAAAAGTAAACAGAGACCCCAAGTAAAACATG
GAAATGGGCAAAAATATGAAGCCAACTTTCTAGTTCCTGGGATTGCTGCC
TGCACATGGCTTTGGTTTCTCATGGAACTTGAAGTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_f17.g1 MSMg01no135_f17.g1 CHROMAT_FILE:
MSMg01no135_f17.g1 PHD_FILE: MSMg01no135_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:28 2005
         (633 letters)



>mm_chr10_10481134_10482166
          Length = 1033

 Score = 1162 bits (601), Expect = 0.0
 Identities = 625/633 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctctagaacctgcccagtaggaagagcgactactctggtcaccatcaggcatgggtg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 833 ttgctctagaacctgcccagtaggaagagcgactactctggtcaccctcagacatgggtg 774

                                                                       
Query: 61  tctgcatgactctttctttccttcaagtttctcagatcttaacccagaccttctctttat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 773 tctgcatgactctttctttccttcaagtttctcagatcttagcccagaccttctctttat 714

                                                                       
Query: 121 tttctgttcagcttatttgagtttgagaaggtacttctggatcacaattctaaatgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tttctgttcagcttatttgagtttgagaaggtacttctggatcacaattctaaatgttct 654

                                                                       
Query: 181 gctgtggttgcattttctgagaacacaccctataaggtgtacatcagggtagcctgaaca 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gctgtcgttgcattttctgagaacacaccctataaggtgtacatcagggtagcctgaaca 594

                                                                       
Query: 241 atagtctctgggctcgggggttctacatttgattagatttgtgcagccaaacacaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atagtctctgggctcgggggttctacatttgattagatttgtgcagccaaacacaagaga 534

                                                                       
Query: 301 tcactctccatccttatccagtctgtaatgtcccgtgtttgcctggtgatggacatatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 533 tcactctccatccttatccagtctgtaatgtcccgtgtttgcctggtgatggatatatga 474

                                                                       
Query: 361 tactagggatgttttagttttctgcagctagatgactctactatgttcccacctttaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tactagggatgttttagttttctgcagctagatgactctactatgttcccacctttaatt 414

                                                                       
Query: 421 taaaaaaggaagaaagaaaagaagattgtaaaattaaaagaggctataaaatgttattgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taaaaaaggaagaaagaaaagaagattgtaaaattaaaagaggctataaaatgttattgc 354

                                                                       
Query: 481 atgtttgccaaactaataacattatttcttccataaaaaggtttcacttgggggagatat 540
           ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 353 atgtttgccaaactaataacattatttcttcaataaaaaggttttacttgggggagatat 294

                                                                       
Query: 541 tagtcaaatattcactggaaaagtaaacagagaccccaagtaaaacatggaaatgggcaa 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 293 tagtcaaatattcactggaaaagtaaacagagaccccaagtaaatcatggaaatgggcaa 234

                                            
Query: 601 aaatatgaagccaactttctagttcctgggatt 633
           |||||||||||||||||||||||||||||||||
Sbjct: 233 aaatatgaagccaactttctagttcctgggatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)