BAC Information

Click to search

BAC

Clone NameMSMg01-135G14
Chromosome10 (Build37)
Map Location 56,460,340 - 56,460,533
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
Downstream geneLOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135G14.T7 (MSMg01no135_g14.b1)MSMg01-135G14.TJ (MSMg01no135_g14.g1)
ACCAG341877AG341878
length723731
length of high quality
(start - end)
---194 (242 - 435)
definitionCHROMAT_FILE: MSMg01no135_g14.b1 PHD_FILE: MSMg01no135_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:32 2005CHROMAT_FILE: MSMg01no135_g14.g1 PHD_FILE: MSMg01no135_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACTTGTTCGCACAAGATGTCCACATCAATTTTATTAGAGCTCCTTT
TTTTTGTTTTTTGATTTTGATCTTGTTTTTGATTTTCTAGCTTTCCAGCC
ATCACAATCTTTTGAGTTGTTTCTCATATCATTCATAAGCTAAGCTAAAC
AGAGGGGTAAGGGATTTTAATCAATGGGAGACCACTTACCTGATCCCTAG
TCTTTTTTCCCTTACTTCTTAGATAATTCATAATTTAAGCAAAACTAAAC
AAGCGGGTAAACAATTTAAGTCTGTTGGAGCTTATGTGAGAGCTTTGCTT
TGACACCTCAGCACCAAAATACACCAAAATAATAAAACCAGCAGAGGCAT
CCTTTCTCATGTTTCTTACATTTTTGCCTGTGACTTCTAAGCAACAGCCT
CTTCATGCTTTTCGTAGCAATAACCTCTCCAGTGCATGCTAACTGCATTG
CATGCTGGGGTGCTGGTGTTTTTCAGGTGTGAGATGAGTCCCAGCTATAA
TGTATTCCCAGCTTTCATATGAATCAACACAAAGCCAATGGCTAAACAGT
AAGATCTGGGAAAACTTGATAAAAGGATAATGAAGTCCATTGCCAAAACT
CTGGTCAACTCAGTTCCAGTTTAATAAAGGAATATACATAAACGCCCTAA
AAATGAAACTGTAATCCGACGCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATACAAGAAACATTAAATATA
AATGATAATTTTATTTTTTTTGTTATTGTAGCTTTTTCTTAGAGCGGAGA
ATAAGGGGAAATAATCTGACCTTGTTTATTTTAAGTTTTCCACTTTAATT
TGTATTAGGAACAGACCATGGTAGGTAAAAAGTGAAATCAAAGATGTCAG
TTTTTTGAAGGTAGGATCATTGCCGAGTTGTATAAGAGGATTATTTGTAG
AAAAGAAAAAGAAACAAGGATGATTATTAAGTGAAATTAACTGGCTGAAT
AATGGTTTTAATAACTTGCCTGAGTAGAGGGTGAACTTGAAGCTTCAGAG
GTTGATCTTTATTGCTTTGGAGAGAGCTTTTTGTGCAGAACAAAGGAGAG
GGATGGGATAGAAACTAGAAAGGATGTGAACACACACATATCTATTTTGT
AGGGTCTATTGGACATACCTATGACCTAGGTTTGGGACAAAAAATGAACA
GGTGATTGAAGCAAAACCATTAATGGGGATTGTTTGGAAAATTAAAATCC
TTGGTCCAATAAAAAAAAATTGAAAAAGGGTTGTGTGGGTAACCGGGGGG
TATATTTTTAAAGGGCGTTCCCAGGGGAACCTTTTTTTGGGGGAAAACAA
ATGAATTGTTGCCCTCATCTTAAAGACAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_g14.g1 MSMg01no135_g14.g1 CHROMAT_FILE:
MSMg01no135_g14.g1 PHD_FILE: MSMg01no135_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:32 2005
         (194 letters)



>mm_chr10_56460140_56460733
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgtcagttttttgaaggtaggatcattgccgagttgtataagaggattatttgtaga 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agatgtcagttttttgaaggtaggatcattgccaagttgtataagaggattatttgtaga 260

                                                                       
Query: 61  aaagaaaaagaaacaaggatgattattaagtgaaattaactggctgaataatggttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaaaagaaacaaggatgattattaagtgaaattaactggctgaataatggttttaa 320

                                                                       
Query: 121 taacttgcctgagtagagggtgaacttgaagcttcagaggttgatctttattgctttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacttgcctgagtagagggtgaacttgaagcttcagaggttgatctttattgctttgga 380

                         
Query: 181 gagagctttttgtg 194
           ||||||||||||||
Sbjct: 381 gagagctttttgtg 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)