BAC Information

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BAC

Clone NameMSMg01-137E14
Chromosome10 (Build37)
Map Location 93,669,074 - 93,669,357
singlet/doubletsinglet
Overlap geneNdufa12
Upstream genePctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1
Downstream geneEG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137E14.T7 (MSMg01no137_e14.b1)MSMg01-137E14.TJ (MSMg01no137_e14.g1)
ACCAG343259AG343260
length725736
length of high quality
(start - end)
---284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no137_e14.b1 PHD_FILE: MSMg01no137_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:55 2005CHROMAT_FILE: MSMg01no137_e14.g1 PHD_FILE: MSMg01no137_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNGAGCTGACGCGGAAN
NCNAAAGTTTTCTAAAACCGAGAAAAAAAANAAANCAAGAAAAGGCGAGC
GGACACAAGACNAANAAGCACCAAAAAAAGCGNCCACAGCCGGCGGNCCC
AAAGGCACAAGCACGAGCAGCNAANNAGAAGAAAAGACCCACACAAGAAA
GACCCAGGGNGNCAAGGCCAGCGCCCCGGANNCGGAGCAGGAGCCGGGTT
GGGGAGGCCGACGAGACACGAANCNCAAGCCCAAACCCCAGCGGGCAACA
GGGACAAAGAGCAATTTTTTTTTTCAAGAAACAGCGCCAAGCCCAAAGAA
GAGAGTTGGGAAAACGCCCCCGCCCCCCACCAAAGCGAGACAAGCGCCGA
CGGNCCGGGCGACCGAGACCGAACATTAGCCAGCGAACAGAACGCCCCCC
GAAAACAAAACACAAGACCCGGCAAAGAAAACAGGCAACCAAGGAGACAG
GAGCAGAACCGAAGGGGGAAACCCAAAGAAGAACGGCGAAACCGCAGCCC
CAGCCCCACGGACGAACAAGGAAAGGAGAAGGCACGACCACAACAAGACC
CCGAAAACAGGAAGGGAACGAAGGCCCAAGGAGAAAAGAGCCAACAAAAC
CCGCATTTTTTTTTAAGGAAGGAGGTCTCATAACTAACTATAGATGGGCT
ATTTCAAAAGTACAACCCCGGGGAA
ATACACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGGAAAGGTATTGAAGGAAATTGAAA
GCGGATACATAGTAACTGAGAACCTTAGGAGAGCCAAGCTGACTTAGGCT
GATACAGGCAAAGCTTCAGTTGTCTCAGTATTGGACCAAACCAGCCATGG
CACTGTGTAAGACAAAGTCCATGACTTCGCTCTTCCTGCAAAGGCAGAGA
GATATGCGGAAGCCAGGGGGAAATGTTGAAAGCCAGCAGGGGTTGCTTTA
TGAAGTTTAAGGAAAGAAGGTATTTCTGTGATATAACAGTCACTGTGACA
CAGCAGGTACCAGCGTACAAGCTGCAGCAAATTATCTAGGACATGCAGCT
GAAATCACTGGTGACGTTGGCTGTGCCAAATGAGAGTTTTAGAGTGGATG
AGCCAGCCTTATATTGGAAAAAGATTCCTCTACACAGGAGTTTCATAGCT
TGGGGTTGAGTGAGACATCTATGCCTGGTCTCAGGGTTCAAAGGGCGGCT
CCCTTTGTCCAGGCTAATGCAGCTGATGGCTTCAGGTTTAAGTCAGTGCT
GTTTGTTGTTCCAAAACCTTGTGCTCTGAAGAATTGAGCTAAGATCTGTG
GTCTGTGAGTGGAATGCTAAAATTTAGGCAGCATCACTGTTTGTGTAAAA
CTGAATTTATTTTTGTCACTGGTGGAGGCTTACTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_e14.g1 MSMg01no137_e14.g1 CHROMAT_FILE:
MSMg01no137_e14.g1 PHD_FILE: MSMg01no137_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:55 2005
         (284 letters)



>mm_chr10_93668874_93669557
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagggaaaggtattgaaggaaattgaaagcggatacatagtaactgagaaccttaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagggaaaggtattgaaggaaattgaaagcggatacatagtaactgagaaccttaggaga 260

                                                                       
Query: 61  gccaagctgacttaggctgatacaggcaaagcttcagttgtctcagtattggaccaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaagctgacttaggctgatacaggcaaagcttcagttgtctcagtattggaccaaacc 320

                                                                       
Query: 121 agccatggcactgtgtaagacaaagtccatgacttcgctcttcctgcaaaggcagagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccatggcactgtgtaagacaaagtccatgacttcgctcttcctgcaaaggcagagaga 380

                                                                       
Query: 181 tatgcggaagccagggggaaatgttgaaagccagcaggggttgctttatgaagtttaagg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgcggaagccagggggaaatgttgaaagccagcaggggttgctttatgaagtttaagg 440

                                                       
Query: 241 aaagaaggtatttctgtgatataacagtcactgtgacacagcag 284
           |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaggcatttctgtgatataacagtcactgtgacacagcag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)