BAC Information

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BAC

Clone NameMSMg01-137F22
Chromosome10 (Build37)
Map Location 5,471,900 - 5,472,141
singlet/doubletsinglet
Overlap geneEsr1
Upstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
Downstream geneLOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137F22.T7 (MSMg01no137_f22.b1)MSMg01-137F22.TJ (MSMg01no137_f22.g1)
ACCAG343318AG343319
length849727
length of high quality
(start - end)		251 (40 - 290)664 (62 - 725)
definitionCHROMAT_FILE: MSMg01no137_f22.b1 PHD_FILE: MSMg01no137_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:02 2005CHROMAT_FILE: MSMg01no137_f22.g1 PHD_FILE: MSMg01no137_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCGGAATTCCAT
GGTGGTCTCATGACCACACAGCTGGGAACCAAAATGCCCTGTGATTTTTC
AATGCCTGACTTATTTGGGAAACTAGTTGTCTATATATTTCTGTTTCTTT
ATTCGTAAAATGGCAATAGGAGTAGCAGGAAGCTTCACATATGCTTTGAG
GATAATAAACAATACATGGTAGTCTATGAGCTTACTATGGACTCTATGGG
TGTTTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTNNCNCCTNNTC
TTTTTTCCCTTCCTTTTTTTTTTTTNCCCCCCCCCTCTTTCCCCCCCTTC
CCNTTTCCCTTTTTCCCCCCTCCTCTTCCTTCCTCCCCTTCTCCTCCCCT
TTTTTTTCTTCTTTTCCCCCCCCTCTCTCCCCCCTTCTTCCTTCTCCCCC
TTCCCCTTTTTTTTTTTTTTCCTCCTCCTCTCCCATTCTTCCCTTTTCCC
CCCCCTTTTTTTCTTCTCCTCTCACCCCTCCCCTTTTTTTCCCCTTTTCC
CTTCTTTTTTCCCTCCTTTTTTCTTTTTCCCCTCCCCCTTCCCTTTCCCC
TCTCCCTCTTCTTTTCCCTCCCTTTCTCCCTTATTTTTTTTCTCCCTCCT
CCACCCCCCTTTTTTCTTTTTCTTCTCCTCTCCTTCTCTTTATTTCCTCT
CTCCACTTTCTTCCCTTTCCTCCCCTTTTTCCTCTCTTTTTATCACCCAC
CTCTTCTCCCCTCCCCCCCTTTTTTTTTCTCCCTTTTTCCTCTCCCTCTC
TTCTTCTCCCTCTTCTTATCTTCTCTCTACTTATTTTTTCCCCTCCGCC

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGGAGCCCACCTTCTTGAGTTCTTTATATATATTTGACATTA
GTCCCCTATCTGATTTAGGATAGGTAAATATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTGGCAA
CTTTATGAGGTCCCATTTATCGATTCTCGATCTTACTACACAAGCCATTG
CTGTTCTATTCAGGAACTTTTCCCCTGTACCCATATCTTTGAGGCTTTTT
CCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTC
CTTAATCCACTTAGATTTGCCCTTAGTACAAGGAGATAGGAATGGATCAA
TTCTCATTCTTCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGAT
CAAGTGGCCATAGGTGTGTGGGTTCATATCTGGGTCTTCAATTCTGTTCC
ATTGGTCTACTTGTCTGTTGCTATACCAGTACCATGCAGTTTTTTTTTTT
TTTATCACAACTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCC
ACCAGAGGTTCTTTTATCCTTGAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_f22.b1 MSMg01no137_f22.b1 CHROMAT_FILE:
MSMg01no137_f22.b1 PHD_FILE: MSMg01no137_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:02 2005
         (251 letters)



>mm_chr10_5471698_5472348
          Length = 651

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccatggtggtctcatgaccacacagctgggaaccaaaatgccctgtgatttttca 62
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccatggtggccttatgaccacacagctgggaaccaaaatgccctgtgatttttca 262

                                                                       
Query: 63  atgcctgacttatttgggaaactagttgtctatatatttctgtttctttattcgtaaaat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgcctgacttatttgggaaactagttgtctatatatttctgtttctttattcgtaaaat 322

                                                                       
Query: 123 ggcaataggagtagcaggaagcttcacatatgctttgaggataataaacaatacatggta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggcaataggagtagcaggaagcttcacatatgctttgaggataataaacaatacatggta 382

                                                                       
Query: 183 gtctatgagcttactatggactctatgggtgtttgtgtgtgtatgtgtgtgtgtgtgtgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtctatgagcttactatggactctatgggtgtttgtgtgtgtatgtgtgtgtgtgtgtgt 442

             
Query: 243 gt 244
           ||
Sbjct: 443 gt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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