BAC Information

Click to search

BAC

Clone NameMSMg01-137P14
Chromosome10 (Build37)
Map Location 58,825,946 - 58,826,350
singlet/doubletsinglet
Overlap geneP4ha1
Upstream geneLims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892
Downstream geneLOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137P14.T7 (MSMg01no137_p14.b1)MSMg01-137P14.TJ (MSMg01no137_p14.g1)
ACCAG343757AG343758
length707727
length of high quality
(start - end)
658 (50 - 707)664 (64 - 727)
definitionCHROMAT_FILE: MSMg01no137_p14.b1 PHD_FILE: MSMg01no137_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:51 2005CHROMAT_FILE: MSMg01no137_p14.g1 PHD_FILE: MSMg01no137_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCAAGAAGTTACACTCCAGAGAACCAAATAAGAATGGGGTACA
GAGTTAAATAAAAAATTCTCAACTGAGGAATCTCGAATGGCCAAGAAGCT
CCTAAAGAAATGTTCAACATCCATAGTCATCAGGGAAATGCAAATCAAAA
ACAGCCCTAAGATTCCACCTCACACCAGTTAGAATAGCTAAGATCAAAAG
CTCAGGCAATAGCAGATGCTGGTAAGGATGTGGAGAAAAAGGAACACTCC
TCCATTATCGGTGGGACTGTAAGCTGATACAACCACTTTGGAAAACAATC
TGGTGGGTCCTCAGAAAATTGGAAACAGTTCTACCTGAAGACCCAGTTAT
ACCACTCCTGAGCATATACCCAAAAGATGCTTCAACATATAACAAGGACA
CATGTTCCATTATGTTCACAACAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGTCCCTCAACAGAAGAATAAATAGAGAAAATGTGGTA
CATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGACTTCATGA
AATTCGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGAGAGGTA
AGCAAGACACAAAGGAACACACTTGGTATATACTCACTGATAAGTGAATA
TTAGCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTAGGGCCAAGGGCAGAGTGTATGGTCACATGCTTA
AGACCTGAGGTTTAGTTCCTAGCACATGGAGAAAGAGAACCGAAGCTATT
ACTACTATAGGAAATATAGTTGACTGTGGATTAGGTAATGGCTTCTTAAG
ATACCTAAAGGCAAGGCAACAGAAAGTGACACAGCAAACTGCATTAGTAG
ATAAGACGTCATGGGGTAGAGAGGGCTCAGGGGGTAAGAGTGCTTGCTGC
ACAGGTGTGAGGATCTGAGTTCCTGGCACCCATGTTTTTAAGAGCAGGGC
ACAGCTGTGCACATGTGTAATGCCAGCACTAGGGAGGGAGGAGGGTTTGC
AGGAGGGATAAAGGCTCACGGGGGCTCACTGAGATCCTGCCTCAAGGAAA
GAAGGCAGGAGTGACAGAGCACGATACCCAACACCTTCGTCTCACTTCCC
CTGGGTGCAAATACATGAACCACACACACAGATTAAAACTTGTGCTAATG
AACACCCCTGAGAAAATTAGGACAGGTCACAGAGTAGGATTTAAAATCTA
TGAGACGTTTATCTGATAAAGGACTAGTATCCAGAATATATAAAGACCAC
AAATTAACACAACAGCAGAAATGACTAATAAGCCCATCAGGAACACGCAA
GTGAGCCCAGGAAGCAGCAGCCCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_p14.g1 MSMg01no137_p14.g1 CHROMAT_FILE:
MSMg01no137_p14.g1 PHD_FILE: MSMg01no137_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:51 2005
         (664 letters)



>mm_chr10_58825946_58827009
          Length = 1064

 Score =  737 bits (381), Expect = 0.0
 Identities = 400/407 (98%), Gaps = 2/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagggccaagggcagagtgtatggtcacatgcttaagacctgaggtttagttcctagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttagggccaagggcagagtgtatggtcacatgcttaagacctgaggtttagttcctagc 346

                                                                       
Query: 61  acatggagaaagagaaccgaagctattactactataggaaatatagttgactgtggatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acatggagaaagagaaccgaagctattactactataggaaatatagttgactgtggatta 286

                                                                       
Query: 121 ggtaatggcttcttaagatacctaaaggcaaggcaacagaaagtgacacagcaaactgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ggtaatggcttcttaagatacctaaaggcaaggcaacagaaagtgacacagcaaactgca 226

                                                                       
Query: 181 ttagtagataagacgtcatggggtagagagggctcagggggtaagagtgcttgctgcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttagtagataagacgtcatggggtagagagggctcagggggtaagagtgcttgctgcaca 166

                                                                       
Query: 241 ggtgtgaggatctgagttcctggcacccatgtttttaagagcagggcacagctgtgcaca 300
           |||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 165 ggtgtgaaaatctgagttcctggcacccatgttt--aagagcagggcacagctgtgcaca 108

                                                                       
Query: 301 tgtgtaatgccagcactagggagggaggagggtttgcaggagggataaaggctcacgggg 360
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct: 107 tgtgtaatgccagcactagggagggaggagggtttgcaggagagataaaggcccactggg 48

                                                          
Query: 361 gctcactgagatcctgcctcaaggaaagaaggcaggagtgacagagc 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  gctcactgagatcctgcctcaaggaaagaaggcaggagtgacagagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)