Query= MSMg01no139_n03.b1 MSMg01no139_n03.b1 CHROMAT_FILE:
MSMg01no139_n03.b1 PHD_FILE: MSMg01no139_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:20 2005
(603 letters)
>mm_chr10_21258036_21259038
Length = 1003
Score = 1044 bits (540), Expect = 0.0
Identities = 564/572 (98%), Gaps = 2/572 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaaacgagtgtgcgggtctggccagcacagcacttgtgggggtccggccagca 64
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaacgaatgtgggggtctggccagcacagcacttgtgggggtccggccagca 264
Query: 65 ctcactcatggctgctttgctctttgtcagtattgagctgactttcaacattatgccttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcactcatggctgctttgctctttgtcagtattgagctgactttcaacattatgccttc 324
Query: 125 cttgtttgatatcctgggtgggtggaaagcagctcaaaaatgcaaccctcagggcgctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgtttgatatcctgggtgggtggaaagcagctcaaaaatgcaaccctcagggcgctga 384
Query: 185 tctctgctgtcccctgactcacactgaagactcgctatggtttcttttcaagactgtctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctctgctgtcccctgactcacactgaagactcgctatggtttcttttcaagactgtctt 444
Query: 245 ttgatctctagtggggagtcgctgttaacatcaagggagtgtcctaattctttcctttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgatctctagtggggagtcgctgttaacatcaagggagtgtcctaattctttcctttca 504
Query: 305 agtggagctccatggatggagtcagaacccagtttttccctttatgccgagaaagctctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtggagctccatggatggagtcagaacccagtttttccctttatgccgagaaagctctg 564
Query: 365 gaagctagccattggtttgcctatcccattctttcaaaggtctaggttacagggagaatc 424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 565 gaagctagccattggtttgcctatcccattctttcaaaggtctaggctacagggagaatc 624
Query: 425 agatgagggggcgatgcttgctgcactgacacaattgcaatcctctaatcccagccattg 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 625 agatgagggggcgatgcttgctgcagtgacacaattgcaatcctctaatcccaaccattg 684
Query: 485 ctttgtgcacacagccagagtctctattcccagccattgctttgtgcacacagccagagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctttgtgcacacagccagagtctctattcccagccattgctttgtgcacacagccagagt 744
Query: 545 ctctattccc-agccattgctttgtgcacaca 575
|||||||||| | |||||||| ||||||||||
Sbjct: 745 ctctattcccta-ccattgctctgtgcacaca 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_n03.g1 MSMg01no139_n03.g1 CHROMAT_FILE:
MSMg01no139_n03.g1 PHD_FILE: MSMg01no139_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:20 2005
(594 letters)
>mm_chr10_21375859_21376852
Length = 994
Score = 714 bits (369), Expect = 0.0
Identities = 393/401 (98%)
Strand = Plus / Minus
Query: 194 cagccttcaggtgaagatgtagaactctcagctcttcctgcaccatgcctgcctggatgc 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 cagccttcaggtgaagatgtagaactctcagctcttcctgcaccatgcctgcctggatgc 935
Query: 254 tgtcatgctcctgccttgataataatagaatgaacttctgaacctctgaacctgtaagcc 313
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 934 ggtcatgctcctgccttgataataatagactgaacctctgaacctctgaacctgtatgcc 875
Query: 314 agacccaattaaatgttattttcataggagttaccttggtcatggtatctgttcatagcc 373
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 agccccaattaaatattattttcataggagttaccttggtcatggtatctgttcatagcc 815
Query: 374 gtaaaaccctaactaagccagtagttttcagaattatctctttaggtttatatttctcct 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gtaaaaccctaactaagccagtagttttcagaattatctctttaggtttatatttctcct 755
Query: 434 catctacaactaggctatgacaagaatcattccagagtcaggcttttgcctcagtactca 493
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 754 catctacaactaggctatgacaagaatcattccagagtcaggcttttgcctcggtactca 695
Query: 494 gtatgtagaaaatggccacgaattgcctgctgagtgtgcatgtaacatggacagctgagt 553
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 694 gtatgtagaaaatggccacgaattgcctgctgagtgtgcatgtaacatggacaactgagt 635
Query: 554 taatggaagcatagagagtgagtaattttggaaaactaaaa 594
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 taatggaagcatagagagtgagtaattttggaaaactaaaa 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
