BAC Information

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BAC

Clone NameMSMg01-140H06
Chromosome10 (Build37)
Map Location 16,482,561 - 16,482,874
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671439, LOC382457
Downstream geneLOC546472, LOC100039576, LOC627511, Cited2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140H06.T7 (MSMg01no140_h06.b1)MSMg01-140H06.TJ (MSMg01no140_h06.g1)
ACCAG345583AG345584
length719724
length of high quality
(start - end)
326 (47 - 372)327 (70 - 396)
definitionCHROMAT_FILE: MSMg01no140_h06.b1 PHD_FILE: MSMg01no140_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:11 2005CHROMAT_FILE: MSMg01no140_h06.g1 PHD_FILE: MSMg01no140_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGAATCTC
AATATTATCGTGCTCCTGACTGGAAACATCATGATGGGGTTTGTGTGGAA
GAAAAATCAAATTATCACAGATGTCCTATTGAAATGGTTCATTCTTAGTT
CAAAGAACCAATGTTATATTGTTATTGAGAATAAAAATACCAAACAGTTG
TATCATTCCCATTTCAAATTAATGCAAACTGCTTTGTCATAGTACATTTA
TTTTATTGTAATCTTTTTATTCTTTACTTTCATCTTATGTTTTATCAAAT
TTACCAGAATTCAATTATATTGATTTCTTTTCTTAGTCACCAACCTCTGT
GCCTTGAAGAATCACACTCAGTCTGCAGTCAAGAATATTAGAAACATGTG
TCCTGAGATGCTAAACAACTGCCCCAAATCACAGAGGCAGTTAAGAATAA
AATAACGACTTATGTCCATGTGATTCATTCATTTACAGTCAATACTCTTA
CTCCACGTACTTTCATAATGTAATGAAACCATATTTGCTGGCTATTATTC
CAAGTTAAGTTATACAAAGAACATGCTTATGATGTTACCCTAGCCAGACT
TTCTACATTCTGGCGCAGCTTTTAAATTGACTTACCTCATTGGGTCCGCC
CATATGATTGTTTTAACACCAATTTTGTTTGTATATGCGCCTTCTGTGTG
TTATATTTACTGTACTCGC
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTGTTTTGTGGTGAAAAGTTCTGTAGATA
TCTGTTAAATCCATTTGGTTCATAACCTTTATTAGTTTCACTGTTTCCCT
GTTTAGTTTCTGTTTCAATGACCTGTCCATTGGTGAGAGTGGGAAGTTGA
AGTCTCCCACTTTTATTCTGTGGGGTTCAATGTGTATTTTGAGCTTTACT
ACAGTTTCTTTTATGAATGTGGGTACTCTTCCATTTGGGGCATAGAAATT
GTCTCTTGGTGGATTTTTCCCTTGATGAAAATGAAGTGTCCTTCCTCATC
ACACTTGATAACTTTTGGTTGAAAGTCTATTTTATTGGATATTAGGGTGA
TATCTCCAGCTTGTTTCCTGTGACCATATGCTTGGAATACCCTTTTCCAT
TCATTTACTCTGAGATAGTGGCTGCCTTTGTTTACTGAGGCATGTTTCTT
GTATACAGAATAATGCTTTTATCTTGTTTGCATATCCCGTCTGCTTACTT
ATTTCTTTTTATAGTTGAGTTGAGCCCACTTATATTGATAGATACTAAAT
ATATATGACTGTTGCTTCCCTGTTTTTTTATCCATGCTCCCACCTTTATC
ATTATCATTATTTCTAATTTTTCACCCTTCTTTTATTAATATTCATTATT
ATTTTTATCTCTGGCCAGTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_h06.b1 MSMg01no140_h06.b1 CHROMAT_FILE:
MSMg01no140_h06.b1 PHD_FILE: MSMg01no140_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:11 2005
         (326 letters)



>mm_chr10_16482348_16483074
          Length = 727

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  gtgctcctgactggaaacatcatgatggggtttgtgtggaagaaaaatcaaattatcaca 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gtgctcctgactggaaacatcatgatggggtttgtgtggaagaaaaatcaaattatcaca 273

                                                                       
Query: 74  gatgtcctattgaaatggttcattcttagttcaaagaaccaatgttatattgttattgag 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gatgtcctattgaaatggttcattcttagttcaaagaaccaatgttatattgttattgag 333

                                                                       
Query: 134 aataaaaataccaaacagttgtatcattcccatttcaaattaatgcaaactgctttgtca 193
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 334 aataaaaataccaaacagttgtatcatccccatttcaaattaatgcaaactgctttgtca 393

                                                                       
Query: 194 tagtacatttattttattgtaatctttttattctttactttcatcttatgttttatcaaa 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tagtacatttattttattgtaatctttttattctttactttcatcttatgttttatcaaa 453

                                                                       
Query: 254 tttaccagaattcaattatattgatttcttttc-ttagtcaccaacctctgtgccttgaa 312
           |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 454 tttaccagaattcaattagattgattttttttccttagtcaccaacctctgtgccttgaa 513

                         
Query: 313 gaatcacactcagt 326
           ||||||||||||||
Sbjct: 514 gaatcacactcagt 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 727
Length adjustment: 9
Effective length of query: 317
Effective length of database: 718
Effective search space:   227606
Effective search space used:   227606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)