MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-143M08
Chromosome	10 (Build37)
Map Location	80,137,292 - 80,137,412
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2
Downstream gene	Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916
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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-143M08.T7 (MSMg01no143_m08.b1)	MSMg01-143M08.TJ (MSMg01no143_m08.g1)
ACC	AG348030	AG348031
length	849	749
length of high quality (start - end)	---	120 (76 - 195)
definition	CHROMAT_FILE: MSMg01no143_m08.b1 PHD_FILE: MSMg01no143_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:24 2005	CHROMAT_FILE: MSMg01no143_m08.g1 PHD_FILE: MSMg01no143_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:25 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	AAAATTTGCGGGCGCTATAGGATTATTAAATACAAAAAAGGGCGGGGAAT TCCGGGATGGCCCCAGCAAAAAAAAAAACCCGGGCTTCAAAAACCCCATT CTAAAATAATCTTGGGGGGGGGGCGGTGGAAAACCCAAATGGTTTTTTTC TTGGGAGAACGTGGGCCAAAAAACACCCGGACAAATTTCCCCTGGCTACT CTTTGTAGTGAGATAAGAATAAAACAGCAATTTCTCTCATCATTAAGAGA GCGGTGTAAATATAAAAAAAACAAACAAAAGTAAACACATACCCTCCCTA ATTTTATACCACCCCAAATACCCGCACTACGCTCCCAGCTTTTTATTTAA TACAGGGGAATAAATATCAAAGTCACTATTCTCGTATAACCCCTATAATT CTCCCCCCCCAAACACACCCACGAAAACATGTGCATCTTATAGATTTTGT TATATGTAGAAAAGTCCCTACCCCCCACAACATAATTGTATTTGAATTGA TAGCTACTCCTATACAAAATAAAAAAGATATATACATACTATTTAACAAT AAATATCGCCCACCAATATTACGGATTACTCCAAACTAAGATACTAATAT CGTTTGGTTTGACGTATATATTTTATATGGATGCATGCTCCCATCTACTT CTATAAATAGATCACAACTCATTTATATCAATAATAATTACTAATATATT TTCCCCCCATTGTCGTACGATATTTTCATATAGTCCATATCAATCGTTAT AAAATTATTTAACTCGCCGGCCCAAGTATAACACTCTCTCTATAATATTA CCTCAAGATGATTTCGGCGCGAAATACTAAATGCACCGGATACACTTCG	TTCCGATGATAGGGGAGGCCTGGCAGACGCCTGTCACAAGAATAGXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXTTCCCTATCTGATGCCCCTCCCACA GGGGTGCAGGCACACACATACACACTCTTGCCTTCTCTACAGGTCAACAG GTCCCTGCCCCAGGAAGCCATTACATAATCCAGCCTTCTGGGTGGGGTGA ATACATATTCCACACAATATACATTTTTATTCCCCTCCCCCCCGCAATAA ACACAATAGTATATCTGTATTTATACAAAAATATATTAAACCAAATAAGC CATAAACTTACCAAATCTTTCTTTTTAATAACACAACAACACATTACTTT TCACACTCATACTATACATAAAACGCCCTCTCCACTTTCTATTTAACTAT ATTGATCCCATTCAACCACTAACTAAAAAATTTCCACCCCTCATAATTAC ATCAACCATTAAAACACAAACGCTCATTTATTTATAACTACAATCTTCCC TCCCAAAAATATATATTCACTCATAATTTTATTATTTAAATTAATAATTC CACCAATATTTTTTACACCACCCCCCCCTTATTTATATTCCTTCACCCCC CTTTTTTTATCCTTCGTCTCCTATCCTATCCGGTAATTCTCATATATTCT AATTATTTTTTACTATATTCTCCTAAACATTACCTTTTCATCAACCCATT CCTCCTTCATATCACATTCTTAATTATTCCCTATTTAATTCATACCCAA
quality values	Open. Hide. 11 11 11 9 8 8 9 8 8 14 13 13 13 15 16 10 6 6 6 6 6 11 9 9 9 9 9 9 9 9 9 9 9 9 12 22 9 9 8 8 9 6 6 6 8 8 10 19 13 13 14 14 12 11 11 10 9 9 9 9 13 12 7 6 6 6 8 8 10 8 8 8 8 8 8 8 8 8 18 20 28 17 19 8 8 8 8 13 9 12 15 16 14 11 10 9 8 10 8 6 6 8 8 8 10 8 8 9 9 11 12 12 11 10 9 10 10 13 14 18 15 13 10 8 8 8 8 8 8 11 11 15 10 15 9 9 9 9 9 8 8 8 10 8 13 23 24 20 14 10 10 10 6 8 6 6 6 6 8 8 8 8 12 12 12 8 8 8 13 8 9 8 7 6 6 8 8 9 9 9 10 12 12 18 12 11 10 10 10 8 10 12 10 8 8 8 6 6 6 8 8 9 9 8 8 8 8 8 8 9 10 8 8 6 6 6 6 8 6 9 9 13 10 8 8 8 8 8 11 11 11 8 8 8 8 8 8 8 10 9 9 9 9 10 10 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 10 11 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 9 9 9 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 10 11 15 18 15 11 9 9 8 8 8 8 9 9 10 8 8 8 8 8 8 9 9 9 9 10 8 8 8 8 8 8 10 10 10 8 8 10 10 10 10 8 8 8 8 8 8 8 8 8 6 8 8 9 9 12 15 15 15 12 12 12 9 9 9 8 8 7 9 10 8 8 8 8 8 8 10 10 16 10 10 10 10 10 9 8 8 6 6 8 8 10 10 10 10 19 16 19 11 12 12 9 9 9 11 10 10 10 10 12 13 10 10 12 15 11 11 8 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 8 8 8 10 9 10 11 11 10 10 9 9 9 8 8 8 9 8 8 6 6 8 8 8 8 8 8 8 11 18 21 17 7 7 7 7 8 8 10 15 13 10 10 8 8 8 10 10 8 8 8 8 8 8 8 6 6 6 6 8 8 8 10 10 10 11 9 10 9 9 10 10 14 12 9 9 8 8 11 8 9 10 9 11 10 10 8 8 8 8 8 8 9 8 8 8 8 8 8 10 11 11 11 9 9 9 13 10 9 10 8 8 8 10 10 10 13 10 6 6 6 6 8 8 8 8 8 8 8 8 11 11 11 11 11 11 6 8 6 6 8 6 6 6 6 8 8 10 10 8 8 8 10 15 10 8 8 8 8 8 10 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 8 8 8 8 8 8 10 8 8 8 9 8 8 6 6 8 8 8 8 8 8 7 6 6 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 6 8 8 9 10 8 10 6 7 8 8 8 6 6 8 6 6 6 7 8 8 9 9 8 8 8 8 8 6 6 8 8 10 16 16 22 22 20 23 22 24 24 15 15 13 13 8 8 6 6 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 10 10 8 8 11 11 11 10 9 10 17 13 14 9 9 8 8 8 8 10 7 6 8 8 13 13 21 21 11 8 8 8 8 10 7 6 10 6 9 9 9 9 10 11 11 11 11 11 10 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 9 6 8 6 6 10 8 10 10 8 6 8 6 6 8 8 6 6 6 6 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 13 15 10 10	Open. Hide. 6 6 8 6 8 8 11 10 8 6 6 6 6 8 8 10 12 11 12 11 15 22 10 8 6 6 8 10 15 19 18 19 13 9 6 6 6 6 6 6 9 9 9 9 9 9 10 15 17 20 28 28 31 31 31 30 30 20 17 10 10 9 10 10 9 14 11 15 12 12 12 22 24 33 33 41 53 47 57 57 57 57 47 30 30 17 14 14 27 27 50 53 57 57 47 42 42 42 37 33 31 31 37 43 43 43 43 37 39 32 32 24 36 29 32 32 42 40 41 41 41 41 41 50 50 50 57 57 57 57 57 43 44 44 47 46 42 42 25 25 20 13 13 13 16 24 30 57 43 43 39 41 41 39 39 42 31 31 25 25 24 28 24 12 12 12 19 21 33 36 42 47 42 39 43 43 37 39 43 40 32 32 23 23 23 32 37 37 39 37 28 28 19 21 15 21 19 10 10 10 9 9 8 8 8 8 8 8 8 9 9 9 11 11 11 12 13 8 8 8 8 8 8 8 8 8 8 6 6 8 10 13 12 13 11 15 14 14 19 15 13 9 6 8 8 8 8 8 6 10 6 6 6 8 9 9 9 6 6 6 6 10 12 10 8 8 8 12 13 8 8 8 10 8 8 10 9 9 9 11 11 11 12 9 11 9 11 11 11 10 11 10 10 10 8 8 7 7 7 7 13 11 10 10 10 10 8 8 8 10 8 8 11 8 8 8 8 8 8 10 12 15 16 17 19 11 11 9 11 11 10 12 12 9 8 8 11 8 6 6 8 8 8 8 8 6 6 8 8 8 9 9 9 10 11 12 11 10 10 10 10 8 8 12 7 7 12 6 8 8 8 10 9 9 9 8 13 8 8 8 8 8 10 8 8 8 8 9 17 11 10 8 10 8 10 10 10 10 10 10 16 13 8 8 8 8 10 8 9 8 8 8 8 6 6 11 8 8 8 8 15 10 12 10 10 12 12 11 10 10 10 10 9 10 9 10 10 13 11 11 9 10 11 9 9 9 8 10 8 8 8 8 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 11 13 16 9 9 8 8 8 8 8 8 6 8 6 6 8 8 10 10 12 11 11 15 10 10 10 10 12 11 10 11 11 8 8 11 8 8 8 8 10 8 9 8 8 8 8 8 8 7 7 8 8 8 8 10 8 11 11 10 10 10 10 10 10 10 10 10 9 10 10 10 13 7 9 7 6 7 6 8 8 8 9 9 10 12 12 8 8 6 6 6 7 7 9 11 11 13 19 14 14 10 10 6 6 6 7 9 8 8 8 8 10 8 10 8 11 10 8 8 8 8 11 12 12 12 18 28 28 19 19 10 9 8 12 13 9 9 8 10 9 9 8 10 12 8 8 8 8 7 10 13 12 13 8 8 8 8 10 10 10 12 11 11 8 10 6 6 8 8 10 10 11 8 10 8 8 6 7 8 8 10 12 12 14 8 8 7 9 9 9 10 10 10 11 8 10 8 8 8 8 8 8 8 10 13 9 10 10 10 15 13 10 11 12 10 10 10 8 8 8 8 8 10 8 8 8 8 8 8 10 10 10 9 9 10 8 8 8 8 9 10 9 9 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 9 10 10 10 10 10 10

Alignment Information

BAC End 1	BAC End 2
	Query= MSMg01no143_m08.g1 MSMg01no143_m08.g1 CHROMAT_FILE: MSMg01no143_m08.g1 PHD_FILE: MSMg01no143_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:25 2005 (120 letters) >mm_chr10_80137092_80137612 Length = 521 Score = 219 bits (113), Expect = 6e-62 Identities = 119/121 (98%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 1 ttccctatctg-atgcccctcccacaggggtgcaggcacacacatacacactcttgcctt 59 \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 201 ttccctatctgcatgcccctcccacaggggtgcaggcacacacatacacactcttgcctt 260 Query: 60 ctctacaggtcaacaggtccctgccccaggaagccattacataatccagccttctgggtg 119 \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 261 ctctacagggcaacaggtccctgccccaggaagccattacataatccagccttctgggtg 320 Query: 120 g 120 \| Sbjct: 321 g 321 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 4 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 120 Length of database: 521 Length adjustment: 8 Effective length of query: 112 Effective length of database: 513 Effective search space: 57456 Effective search space used: 57456 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no143_m08.g1 MSMg01no143_m08.g1 CHROMAT_FILE:
MSMg01no143_m08.g1 PHD_FILE: MSMg01no143_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:25 2005
         (120 letters)



>mm_chr10_80137092_80137612
          Length = 521

 Score =  219 bits (113), Expect = 6e-62
 Identities = 119/121 (98%), Gaps = 1/121 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccctatctg-atgcccctcccacaggggtgcaggcacacacatacacactcttgcctt 59
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccctatctgcatgcccctcccacaggggtgcaggcacacacatacacactcttgcctt 260

                                                                       
Query: 60  ctctacaggtcaacaggtccctgccccaggaagccattacataatccagccttctgggtg 119
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctacagggcaacaggtccctgccccaggaagccattacataatccagccttctgggtg 320

            
Query: 120 g 120
           |
Sbjct: 321 g 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 521
Length adjustment: 8
Effective length of query: 112
Effective length of database: 513
Effective search space:    57456
Effective search space used:    57456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

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BAC

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BAC End Information

Alignment Information