TTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCATTGCTTATCAAGAGTAGAATGAATAGCACTTAAAAGAATGT
GAAGAAAGCAACCAGTGTGAATGCTTTTCAGCCCAGCAGGCACAGGTTCA
CTAGTTTGGGCTAAAATGAGAAAGTGGTACACATTAGAGAAAAGCCTCCT
CAGCCACTGAACTGTATCCCAAAAGTTGCCATAGACTTTCTTGAAGCCTT
ATTTGTTCTTTCTCTTTCATGAAGTCAAGTCCCTTCATCATGGTATGGCA
TTGTACCATGAGAGGCATTTGAGACAGAATTACAGCTGGTAACCTTTCAC
CTTACTTCTGCATTCATTTTACTACAAAAAGGAGCCTCCAGCTCCTTTTA
GGGTCCCTCTTTCCTTTATAACCAAAAAGAGACTGTCACCTGCACAGCCT
TTATGACACAGCAATGAATGAAATGGGGCAACAAGTCACAAATCATCTCT
TTATTTCCTCCAACAGTCAGTGGAAAAAGTGCCATAGAAATCCATGTACT
TTTAACTCATTGTAAGTTTTAGTATTAAAAAGTCACAAATAAAAAAAAAT
TGCACAGCAAAATTAACTTGATCCAAAGACTATACAACTCAATGAACTTC
TATAAACTTAGAGCAATCTTTGGAATCTATAAGAAATGCTCAATT

NAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGAGCTTGACAGCATGCACAGAG
CCTGCATATGTCTGCACCAGGTGAGACCCACTGCTAACAGGGCAGACACA
AGCTCCCATCCCTCATCCAGAAGCTATGTCCTATTGATAATTACTTGCAA
AAAAAAATTAGCTTTCTCCCCCCCTAAAAAAAAATCTCACTAGGCATACA
AAGCACACTTAAGGGCAGGGACCATGCCCAGTAGTAAATGGCCAACACAG
AACGAACTCTTCTGTTGTTGGTGTTGGTGATTCATTCATTCATACATTCA
TTCTCTTACCTTATCAGTCTTTTGCTTCTATATTGTGGTTTCTAATTTTA
TATTTTTATGTGATTTTTAACATGTGTAAATATGTGTACTTCTATATATA
CTTCTTGTACTTCTGCTTTGGTTTTGTTTGTTTTTATTTTGCCTTTTATT
ATTTAATTTAGTTTTAGATGTTTTTTGTTTTCTCATGAGAGAGAGAACAA
ATGTGTGTGGACTTGGATGTGTGGTGAGGTAGAGAGAATCTGGGAGGAGT
GTATGTTTTTCTTTCCCTCTTCTTCTCTGCCTCTTTTTTTTCCTCTTTTC
TTTCTTTCTCTCCTTCCCTGCGTCTCTTGTCTTTCTTTTCCC

Query= MSMg01no145_j15.b1 MSMg01no145_j15.b1 CHROMAT_FILE:
MSMg01no145_j15.b1 PHD_FILE: MSMg01no145_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:44 2005
         (628 letters)



>mm_chr10_55254617_55255645
          Length = 1029

 Score = 1170 bits (605), Expect = 0.0
 Identities = 620/625 (99%), Gaps = 1/625 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgcttatcaagagtagaatgaatagcacttaaaagaatgtgaagaaagcaac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgcttatgaagagtagaatgaatagcacttaaaagaatgtgaagaaagcaac 264

                                                                       
Query: 65  cagtgtgaatgcttttcagcccagcaggcacaggttcactagtttgggctaaaatgagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtgtgaatgcttttcagcccagcaggcacaggttcactagtttgggctaaaatgagaa 324

                                                                       
Query: 125 agtggtacacattagagaaaagcctcctcagccactgaactgtatcccaaaagttgccat 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 agtggtacacattagagaaaagcctcctcggccactgaactgtatcccaaaagttgccat 384

                                                                       
Query: 185 agactttcttgaagccttatttgttctttctctttcatgaagtcaagtcccttcatcatg 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 agactttcttgaagccttatttgttctttctgtttcatgaagtcaagtcccttcatcatg 444

                                                                       
Query: 245 gtatggcattgtaccatgagaggcatttgagacagaattacagctggtaacctttca-cc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 gtatggcattgtaccatgagaggcatttgagacagaattacagctggtaacctttcatcc 504

                                                                       
Query: 304 ttacttctgcattcattttactacaaaaaggagcctccagctccttttagggtccctctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacttctgcattcattttactacaaaaaggagcctccagctccttttagggtccctctt 564

                                                                       
Query: 364 tcctttataaccaaaaagagactgtcacctgcacagcctttatgacacagcaatgaatga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcctttataaccaaaaagagactgtcacctgcacagcctttatgacacagcaatgaatga 624

                                                                       
Query: 424 aatggggcaacaagtcacaaatcatctctttatttcctccaacagtcagtggaaaaagtg 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 aatggggcaacaagtcacaaatcatctctttagttcctccaacagtcagtggaaaaagtg 684

                                                                       
Query: 484 ccatagaaatccatgtacttttaactcattgtaagttttagtattaaaaagtcacaaata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccatagaaatccatgtacttttaactcattgtaagttttagtattaaaaagtcacaaata 744

                                                                       
Query: 544 aaaaaaaattgcacagcaaaattaacttgatccaaagactatacaactcaatgaacttct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaaaaaattgcacagcaaaattaacttgatccaaagactatacaactcaatgaacttct 804

                                    
Query: 604 ataaacttagagcaatctttggaat 628
           |||||||||||||||||||||||||
Sbjct: 805 ataaacttagagcaatctttggaat 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space:   629742
Effective search space used:   629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)