Query= MSMg01no146_o08.b1 MSMg01no146_o08.b1 CHROMAT_FILE:
MSMg01no146_o08.b1 PHD_FILE: MSMg01no146_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:13 2005
(532 letters)
>mm_chr10_59274415_59275346
Length = 932
Score = 936 bits (484), Expect = 0.0
Identities = 520/532 (97%)
Strand = Plus / Minus
Query: 1 taccactctaggctaatcctatctttcttaattgtggccatccagaaagtcattacatag 60
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 583 taccacactaggctaatcctatctttcttaattgtggccatcgagaaagtcattacatag 524
Query: 61 gctgtgagcttattctcattagctgttctggaaaaagttaatatttttcagcaaagtcaa 120
|||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 523 gctgtgagctcattctcattagctgttatggaaaaagttaatatttttcagtaaagtcaa 464
Query: 121 tgtcctgttggaaagtgccaactctttagaacaggactggacaattagaaaggaaagccc 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 463 tgtcctgttggaaagtgccaactctttagaacaggactggacagttagaaaggaaagccc 404
Query: 181 agtacacagaggctagaactgggactgagcaggctgagaacagactgggaaacacaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agtacacagaggctagaactgggactgagcaggctgagaacagactgggaaacacaagga 344
Query: 241 agatcaggagtgtgcacctcagatttatgcgttcactgaagctatgacgtctacgaaggg 300
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 343 agatcaggagtgtgcacctcggaaacatgcgttcactgaagctatgacgtctacgaaggg 284
Query: 301 agaagacacagccaacggcaggtgaaaggcacagcatctatagggccagagcatcatcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agaagacacagccaacggcaggtgaaaggcacagcatctatagggccagagcatcatcag 224
Query: 361 tatcatcggccttcaggaagaaaggtgcggtcctttaggcctgagatcccagtacaaaag 420
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 223 tatcatcggccttcaggaagaaaggtgtggtcccttaggcctgagatcccagtacaaaag 164
Query: 421 aagctgaggcaggaggatccttagttgaacagcttgggctgtgtactgagaccctgtctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aagctgaggcaggaggatccttagttgaacagcttgggctgtgtactgagaccctgtctc 104
Query: 481 atgatatacccctagaagaaggaggaggaggaaggaaggatgagaaggaggc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 atgatatacccctagaagaaggaggaggaggaaggaaggatgagaaggaggc 52
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_o08.g1 MSMg01no146_o08.g1 CHROMAT_FILE:
MSMg01no146_o08.g1 PHD_FILE: MSMg01no146_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:13 2005
(731 letters)
>mm_chr10_59117377_59118507
Length = 1131
Score = 1203 bits (622), Expect = 0.0
Identities = 701/732 (95%), Gaps = 10/732 (1%)
Strand = Plus / Plus
Query: 5 aactcattgttcataagcattgcccttaggaacacactcccgccccc--at---gaagct 59
||||||| ||||||||||||||| ||||||||||||||| | || ||||||
Sbjct: 205 aactcatccttcataagcattgccattaggaacacactcctg-----tgataaggaagct 259
Query: 60 ctttaagtccaacccaagcatggatggtagtggtggcggcagcaggacaagcctttagca 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 260 ctttaagtccaacccaagcatggatggtagtggtggcggcagcagtacaagcctttagca 319
Query: 120 ccagcactgaggaggcagaggcaagcagatctctgagttcgaggccagcctggtctacag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccagcactgaggaggcagaggcaagcagatctctgagttcgaggccagcctggtctacag 379
Query: 180 agcaagtgccaggacagcaaaagctacacagagaaattccacagaggctgttgcactgag 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcaagtgccaggacagcaaaagttacacagagaaattccacagaggctgttgcactgag 439
Query: 240 gtaggtgaagtttgggggacccatttaggccataacagatgatgcatactgaaattaaag 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaggtgaagtttgggggacccatttaggccataacagatgatgcatactgaaattaaag 499
Query: 300 ggactgtttggtggactgtcttatattagacataagtaggaaaagcaatttctctcgaaa 359
||||| |||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct: 500 ggactatttggtggactgacagatattagacataagtaggaaaagcaatttctttcgaaa 559
Query: 360 tgagaccctgattccagctgcttcaaggatataatatgatttcattagaccagcatcagc 419
|||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct: 560 tgagaccctgattccagctgcttcaaggatataacatgatgtcattacaccagcatcagc 619
Query: 420 attagcccgtaactgataggaactgaaacccttgggtaccaccctggaccaatacggaat 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 attagcccgtaactgataggaattgaaacccttgggtaccaccctggaccaatacggaat 679
Query: 480 tcacattctggattgagagccttccagtttattataatgcatgataacttctgagataac 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 680 tcacattctggattgagagccttccagtttattataatgcaagataacttctgagataac 739
Query: 540 tgacagcctacggtgctcaggaccaccactacctacatttgtttgcagaactaatatatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgacagcctacggtgctcaggaccaccactacctacatttgtttgcagaactaatatatt 799
Query: 600 ttcctttctccaggtcagcctaaggtttcagagtttggggaattctggtggaggcaacat 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttcctttctccaggtcagcctaaggtttcagagtttggggaattctggtggaggcaacat 859
Query: 660 tttgattgagaaacactgttctggaccagaagctttcagaaatttcgacctgtactcata 719
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 860 tttgattgagaaacactgttctagaccagaagctttcagaaatttcaacctggactcata 919
Query: 720 tgttacaccatg 731
||||| ||||||
Sbjct: 920 tgttataccatg 931
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1131
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1121
Effective search space: 808241
Effective search space used: 808241
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
