This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-147G09
Chromosome
10 (Build37)
Map Location
95,974,870 - 95,975,108
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Ube2n
,
Nudt4
,
EG628119
,
Eea1
,
EG432491
,
LOC667380
Downstream gene
Btg1
,
LOC628256
,
4930556N09Rik
,
EG667407
,
Dcn
Link
Open Mouse BAC browser
Click to get alignment info.
name
Ube2n
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:93765
MGI:1934835
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Nudt4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:71207
MGI:1918457
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG628119
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:628119
MGI:3646302
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 32 ESTs, 4 Proteins
name
Eea1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:216238
MGI:2442192
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG432491
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:432491
MGI:3646788
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 212 ESTs, 6 Proteins
name
LOC667380
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667380
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 Proteins
pseudo
: _no_value
name
Btg1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12226
MGI:88215
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC628256
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:628256
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
4930556N09Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:75301
MGI:1922551
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST
name
EG667407
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:667407
MGI:3648168
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins
pseudo
: _no_value
name
Dcn
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13179
MGI:94872
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ube2n
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118131101
GeneID:93765
MGI:1934835
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ubiquitin-conjugating enzyme E2N
transcript_id
: NM_080560.3
name
Nudt4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803369
GeneID:71207
MGI:1918457
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: nudix (nucleoside diphosphate linked moiety X)-type motif 4
transcript_id
: NM_027722.3
name
EG628119
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94388573
GeneID:628119
MGI:3646302
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 32 ESTs, 4 Proteins
product
: predicted gene, EG628119
transcript_id
: XM_892842.2
name
Eea1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:92859696
GeneID:216238
MGI:2442192
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: early endosome antigen 1
transcript_id
: NM_001001932.3
name
EG432491
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94388574
GeneID:432491
MGI:3646788
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 212 ESTs, 6 Proteins
product
: predicted gene, EG432491
transcript_id
: XM_618803.3
name
Btg1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:40363260
GeneID:12226
MGI:88215
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: B-cell translocation gene 1, anti-proliferative
transcript_id
: NM_007569.1
name
4930556N09Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149261126
GeneID:75301
MGI:1922551
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST
product
: RIKEN cDNA 4930556N09 gene
transcript_id
: XM_001480359.1
name
Dcn
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142383942
GeneID:13179
MGI:94872
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: decorin
transcript_id
: NM_007833.3
name
Ube2n
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:18017605
GeneID:93765
MGI:1934835
definition
GO_component
: GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS]; GO:0031372 - UBC13-MMS2 complex [Evidence ISS]
GO_function
: GO:0016874 - ligase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0043130 - ubiquitin binding [Evidence ISS]; GO:0004840 - ubiquitin conjugating enzyme activity [Evidence IDA] [Evidence ISS]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA]
GO_process
: GO:0051092 - activation of NF-kappaB transcription factor [Evidence ISS]; GO:0045739 - positive regulation of DNA repair [Evidence ISS]; GO:0043123 - positive regulation of I-kappaB kinase/NF-kappaB cascade [Evidence ISS]; GO:0006464 - protein modification [Evidence IEA]; GO:0016567 - protein ubiquitination [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IDA]
codon_start
: 1
product
: ubiquitin-conjugating enzyme E2N
protein_id
: NP_542127.1
name
Nudt4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31541994
CCDS:CCDS24138.1
GeneID:71207
MGI:1918457
definition
GO_component
: GO:0005622 - intracellular [Evidence ISS]
GO_function
: GO:0008486 - diphosphoinositol-polyphosphate diphosphatase activity [Evidence ISS] [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO_process
: GO:0019722 - calcium-mediated signaling [Evidence ISS]; GO:0019935 - cyclic-nucleotide-mediated signaling [Evidence ISS]; GO:0007242 - intracellular signaling cascade [Evidence ISS]; GO:0046907 - intracellular transport [Evidence ISS]; GO:0046831 - regulation of RNA export from nucleus [Evidence ISS]
codon_start
: 1
exception
: mismatches in translation
product
: nudix-type motif 4
protein_id
: NP_081998.2
name
EG628119
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83027699
GeneID:628119
MGI:3646302
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_897935.1
name
Eea1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:50053824
GeneID:216238
MGI:2442192
definition
GO_component
: GO:0005769 - early endosome [Evidence ISS] [Evidence IDA]; GO:0005768 - endosome [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
codon_start
: 1
product
: early endosome antigen 1
protein_id
: NP_001001932.1
name
EG432491
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:63606968
GeneID:432491
MGI:3646788
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_618803.1
name
Btg1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:40363261
CCDS:CCDS24140.1
GeneID:12226
MGI:88215
definition
GO_component
: GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS]
GO_function
: GO:0019900 - kinase binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0003712 - transcription cofactor activity [Evidence ISS]
GO_process
: GO:0016477 - cell migration [Evidence ISS]; GO:0030308 - negative regulation of cell growth [Evidence ISS]; GO:0008285 - negative regulation of cell proliferation [Evidence IDA] [Evidence ISS]; GO:0045766 - positive regulation of angiogenesis [Evidence ISS]; GO:0045603 - positive regulation of endothelial cell differentiation [Evidence ISS]; GO:0043085 - positive regulation of enzyme activity [Evidence NAS]; GO:0045663 - positive regulation of myoblast differentiation [Evidence ISS]; GO:0006479 - protein amino acid methylation [Evidence IDA]; GO:0042981 - regulation of apoptosis [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence ISS]; GO:0007286 - spermatid development [Evidence ISS]
codon_start
: 1
product
: B-cell translocation gene 1, anti-proliferative
protein_id
: NP_031595.1
name
4930556N09Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149261127
GeneID:75301
MGI:1922551
definition
codon_start
: 1
product
: hypothetical protein LOC75301
protein_id
: XP_001480409.1
name
Dcn
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6681143
CCDS:CCDS24141.1
GeneID:13179
MGI:94872
definition
GO_component
: GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]
GO_function
: GO:0016740 - transferase activity [Evidence IEA]
codon_start
: 1
product
: decorin
protein_id
: NP_031859.1
name
LOC667380
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667380
definition
number
: 1
pseudo
: _no_value
name
LOC628256
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628256
definition
number
: 4
pseudo
: _no_value
name
LOC628256
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628256
definition
number
: 3
pseudo
: _no_value
name
LOC628256
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628256
definition
number
: 2
pseudo
: _no_value
name
LOC628256
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628256
definition
number
: 1
pseudo
: _no_value
name
EG667407
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:94388575
GeneID:667407
MGI:3648168
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins
product
: predicted gene, EG667407
pseudo
: _no_value
transcript_id
: XR_002021.1
clone name
MSMg01-344E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-117H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407J07
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-448J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-529J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-265N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-299E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474M06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-071I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510M05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-150M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-174H16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276J21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-367F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-275J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-494I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-082E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-115D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-421H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-438F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-438L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-087H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237D20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-262I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-448M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-449E15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-069D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-124O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-507H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-413C20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122C01
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-070F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359J12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-309I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-300B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-150L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-309M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-529E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-326H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-122P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-421N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-143A19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-127C18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-443M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-546G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-390H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-541C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-414C22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-232E24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-413K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191N05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447O18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-323C17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163O01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-011O07
singlet/doublet
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